PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G111800.1.p | ||||||||
Common Name | LOC101757925, SETIT_022796mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 31824.9 Da PI: 10.6188 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.6e-14 | 128 | 172 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + +lG+g+W+ I+r++ ++Rt+ q+ s+ qky Seita.3G111800.1.p 128 PWTEEEHRMFLAGLDKLGKGDWRGISRHFVTTRTPTQVASHAQKY 172 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.988 | 121 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-18 | 122 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-18 | 124 | 176 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-11 | 125 | 175 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 125 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-11 | 128 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.79E-10 | 128 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCSG YRGHENSIST SSNSSGNTSC GGLRLFGVQL QVGSHPLKKC 60 LSMECLSPAA YYGAAAAAAA AAASSLSPSV SSSSSSLVSI EENSERVSSG YMSDGLMGRV 120 QERKKGVPWT EEEHRMFLAG LDKLGKGDWR GISRHFVTTR TPTQVASHAQ KYFLRQNSLT 180 QKKRRSSLFD AVEGAKKVAM PRIASVSGLP FPSLSPRSVD ARTNGAVVLP PFLNLMSSKS 240 PFAGGGGASQ SQHPSSLNLM AKPQAQLQMP DLELKMSTSR LSDQPGSSRS TPFFGTVRVT 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G111800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960912.1 | 0.0 | transcription factor MYBS3 | ||||
TrEMBL | K3Z8C6 | 0.0 | K3Z8C6_SETIT; Uncharacterized protein | ||||
STRING | Si022796m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G111800.1.p |
Entrez Gene | 101757925 |