PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G084600.2.p
Common NameLOC101767815, SETIT_021160mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Nin-like
Protein Properties Length: 800aa    MW: 88425.8 Da    PI: 6.7756
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G084600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.83.9e-27456506252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++
  Seita.3G084600.2.p 456 EKTFSLEVIQHYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 506
                         8999********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.006445526IPR003035RWP-RK domain
PfamPF020421.8E-23459506IPR003035RWP-RK domain
SuperFamilySSF542776.87E-23695790No hitNo description
SMARTSM006661.7E-25705787IPR000270PB1 domain
PROSITE profilePS5174518.862705787IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.7E-25706786No hitNo description
PfamPF005641.4E-17706786IPR000270PB1 domain
CDDcd064072.52E-32706786No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MEKLTLALRY FKDSTNQHLL VQVWVPIRKG DRYMLSTSGQ PFVLDKRSIG LLQYRAVSIM  60
YMFSVDGNNV KDLGLPGRVY KQGVPEWTPN VQYYSITEYA RLNHAISYNV HGTVALPVFD  120
PSTKSCIAVV ELIMTSKKVN YANEVGKVCK ALEAVSLKST EVVEHPYVQI CNEGHHAALV  180
EMLEVLTVIG EELKLPLAQT WVPCKYQNSL VPCGGVKKSC FNIHGSCAQE LCISTSDVAF  240
QVIDAHMWGF RDACVEHHLQ KGQGVSGKAF ILHRPCFCKD VTRFSKMEYP LVHYARMFGL  300
AGCFSVCLQS AYTGNDDYVL EFFLPPDCRK DDEQKVLLES ILALLTQHLH SLHLATDEGS  360
SEELQVSAIT VINNDVQHLN FEGGIHASHE SKTNGILGPD SQKRIVSTEY EMWLSPENDT  420
KCNGKLFVGP KGGCTSDSLL PDNNSKHQVR RRGKAEKTFS LEVIQHYFTG SLKNAAKSLG  480
VCPTTMKRIC RQHGISRWPS RQISKVNRSI SKLKKVIESV EGSESGFTLT SITGPLPVPF  540
SPSNPINIKN GQQTEVIDLS IPSVQENRGS SLQSKLLEND DRLGMAIPQQ SFLANLSRQI  600
EREKASNLRS SSGEPSTHSG TSEESCLGSP ANKTFVSTLM EPQQNMWKPD SFTQELFQTQ  660
DLLLPGLFVN GSGSSENCKN HITDAVNEPS VVPLGSLMSA DNSGIVTVKA RYKEDLLRFR  720
FPCSASIIDL KDEVAKRIQA DVGVFDIKYL DDDHEWVKLT CDADLEECME ISRLSGSNVL  780
RLLVTDIAPI LGSSCGSTG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G084600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680494.10.0protein NLP3 isoform X3
SwissprotQ5NB820.0NLP3_ORYSJ; Protein NLP3
TrEMBLA0A368QD750.0A0A368QD75_SETIT; Uncharacterized protein
STRINGSi021160m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7