PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.3G079800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 969aa MW: 106950 Da PI: 4.8924 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.7 | 3.6e-20 | 48 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +av+ + g++Wk+Ia++++ gRt+ qc +rwqk+l Seita.3G079800.2.p 48 KGNWTAEEDDILRKAVETYKGKNWKKIAECFP-GRTDVQCLHRWQKVL 94 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61 | 2.4e-19 | 100 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l Seita.3G079800.2.p 100 KGPWSKEEDEIIIQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 146 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.1 | 2.6e-15 | 152 | 194 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ + ++ gRt++ +k++w+ Seita.3G079800.2.p 152 KDAWTQEEEIKLIHAHQTYGNK-WAELTKFLP-GRTDNAIKNHWH 194 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.179 | 43 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-17 | 45 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-18 | 47 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 48 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-16 | 50 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 50 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 32.04 | 95 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-31 | 97 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-18 | 99 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 100 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-15 | 102 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 112 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 151 | 199 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.353 | 151 | 201 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-13 | 152 | 194 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 154 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-11 | 154 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 969 aa Download sequence Send to blast |
MTSEKQMASK GTEASAPAVP PDGAVSREPQ KGRLPNGRTT GPARRSSKGN WTAEEDDILR 60 KAVETYKGKN WKKIAECFPG RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IIQMVNKLGP 120 KKWSTIAQAL PGRIGKQCRE RWHNHLNPGI NKDAWTQEEE IKLIHAHQTY GNKWAELTKF 180 LPGRTDNAIK NHWHSSVKKK VDSYRASGLL AQFQGLTPVE YTAGGLNVDS SSAMTNQISE 240 DSGFNVCREV EDSTELSQSS FVKGSCSQEE QTDVALGSHL NVHESLCQDG FTNADNVASA 300 LPDMHHQLST SDMDQGKHLQ EEFSQGMDLD KHLQQEFSQG MDLHLDIDEV PNNFVITDSQ 360 ASSELAGQFQ DTQIMHNLEN DGGSLIPCAV TPCVPILPSV SECEHNINMM SEVSIKNDNC 420 FHPEQWQDIS IQPGVYSSEA ASNFSAPLCP LKTSEPASNF SVPLCPLKTS EPATMMGDHL 480 YYQSSETSLP PSFIFSDVAS NASDVKFETS HCCQDLEIKT CYNASGDPGQ NSYISTEDDR 540 NQTSEPMDSI PEPEKEQLVD LDQSCLEPTA YNGEEALPSQ GDTVLSDKED AGALCYEPPC 600 FSSFEVPFVS CELVTSSDLP EYSPLGIREL MRSSLNFPTP VRLWGSPTRD GSPDAVLKNA 660 AKSFVRTPSI MKKRPRDLSS PSPDIRNEKK SNTEKDCGRS GMSSTRIGKS FMDIPDDFFD 720 LISPRSAFQK KLKLSQENKE NLDQITDQGE NEGNAKHSAG ILTESSVDNQ NTPKHAPNYE 780 SQRLNTSTKA LSNSKDIIFS RSKPSELLVD KSAPFIDAEY EYVNILADTP GIKRGLESPS 840 AWKSPLFTPF KDAYFMSPAS RSVDALGLVK QINEQSAAAL EEAHEVLASG SPWKRHSKEN 900 SDKENIENVA WKNELATSKS LSKLMAEGRV LDFNECSTPV RKKEDKKMDI GGSASSPVAS 960 SYLRMNVR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-66 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-66 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.3G079800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960645.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_004960646.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_004960647.1 | 0.0 | transcription factor MYB3R-1 | ||||
TrEMBL | A0A368QCK3 | 0.0 | A0A368QCK3_SETIT; Uncharacterized protein | ||||
STRING | Si021218m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-103 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.3G079800.2.p |