PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G066400.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 643aa MW: 73034.9 Da PI: 6.8848

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G066400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.2	2.1e-108	250	621	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+ lL++cA+a++ ++l a +lL++++++asp+gd qRla y++ +L+arla+++s++y++l ++t+ ++ l+a++lf v+P+ Seita.3G066400.1.p 250 LRALLIQCAQAIAVNSLPFAGELLKKIRHHASPYGDGSQRLAIYLADGLEARLAGTGSKMYQKLMEKRTR---ATDMLKAYRLFIAVCPFT 337 5789*********************************************************9999998...99************ PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++++ Nq+I + ++g +vHiiDf+i+ G+QWp+L+q +a++++gpp+lRiTg++ p+sg +le+tg+rLa++Ae ++vpf+++ Seita.3G066400.1.p 338 RVAYYFSNQTIADVLNGRPKVHIIDFGITLGFQWPSLIQRFAKQEGGPPKLRITGIDVPQSGfrPCATLESTGKRLAEYAEMFNVPFQYQG 428 *********************************************************99999********************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +++++e++ +++L+++++E+l++n++++ ++l de +++ +rd+vL+++k+++P+v+++ ++ ++s+ Fl rf e l +ys+lfd+l Seita.3G066400.1.p 429 -ITSQWENICIDNLNIDNDEVLIINCMYRTKYLGDELEDIDCPRDRVLRIMKRINPEVLILGISNGLYSSPFFLPRFREVLFHYSSLFDML 518 .799*********************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++++ + +eeri +Er llg + nvvacegaer+er et+++W+ r +aGFk++p+++ + k +k++ + + ++e+sg+l++gW Seita.3G066400.1.p 519 NTTVLQSHEERIRIERDLLGAGALNVVACEGAERIERPETYKQWQVRSLKAGFKQLPINQAILKRSIDEKNKHYHNDFVIDEDSGWLLQGW 609 ***********************************************************99988888888788********** PP GRAS 363 kdrpLvsvSaWr 374 k+r + +vS+W+ Seita.3G066400.1.p 610 KGRVMHAVSSWK 621 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.566	224	601	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-106	250	621	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MESPEYCEIN SNMTLDYIDQ LLMEDSDEKA SIYQRHDALQ ATEKPFYDIL GQAYPSSPKD 60 TRISTDSQID CLQDSSSSYT KGACSGRFVS DILGPQGMHL VANDWASECD HFSLQFQRAA 120 EEANKLVPSI ERLMVDLDSN GLSDSNQMIG EAIGQKSKHV GKIRSHPHVD LELLEARNSK 180 HLAISASETT RDEMFDSVLL CDWQLHCDAA HLREMKAKEE SNSQQNVQSK RYGHGKVKSR 240 SKKKEEGIDL RALLIQCAQA IAVNSLPFAG ELLKKIRHHA SPYGDGSQRL AIYLADGLEA 300 RLAGTGSKMY QKLMEKRTRA TDMLKAYRLF IAVCPFTRVA YYFSNQTIAD VLNGRPKVHI 360 IDFGITLGFQ WPSLIQRFAK QEGGPPKLRI TGIDVPQSGF RPCATLESTG KRLAEYAEMF 420 NVPFQYQGIT SQWENICIDN LNIDNDEVLI INCMYRTKYL GDELEDIDCP RDRVLRIMKR 480 INPEVLILGI SNGLYSSPFF LPRFREVLFH YSSLFDMLNT TVLQSHEERI RIERDLLGAG 540 ALNVVACEGA ERIERPETYK QWQVRSLKAG FKQLPINQAI LKRSIDEKNK HYHNDFVIDE 600 DSGWLLQGWK GRVMHAVSSW KPKESYTNQK DRSRSSCTNQ LY*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MESPEYCEIN SNMTLDYIDQ LLMEDSDEKA SIYQRHDALQ ATEKPFYDIL GQAYPSSPKD  60
TRISTDSQID CLQDSSSSYT KGACSGRFVS DILGPQGMHL VANDWASECD HFSLQFQRAA  120
EEANKLVPSI ERLMVDLDSN GLSDSNQMIG EAIGQKSKHV GKIRSHPHVD LELLEARNSK  180
HLAISASETT RDEMFDSVLL CDWQLHCDAA HLREMKAKEE SNSQQNVQSK RYGHGKVKSR  240
SKKKEEGIDL RALLIQCAQA IAVNSLPFAG ELLKKIRHHA SPYGDGSQRL AIYLADGLEA  300
RLAGTGSKMY QKLMEKRTRA TDMLKAYRLF IAVCPFTRVA YYFSNQTIAD VLNGRPKVHI  360
IDFGITLGFQ WPSLIQRFAK QEGGPPKLRI TGIDVPQSGF RPCATLESTG KRLAEYAEMF  420
NVPFQYQGIT SQWENICIDN LNIDNDEVLI INCMYRTKYL GDELEDIDCP RDRVLRIMKR  480
INPEVLILGI SNGLYSSPFF LPRFREVLFH YSSLFDMLNT TVLQSHEERI RIERDLLGAG  540
ALNVVACEGA ERIERPETYK QWQVRSLKAG FKQLPINQAI LKRSIDEKNK HYHNDFVIDE  600
DSGWLLQGWK GRVMHAVSSW KPKESYTNQK DRSRSSCTNQ LY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-53	240	623	8	380	Protein SCARECROW
5b3h_D	1e-53	240	623	8	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G066400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680688.1	0.0	scarecrow-like protein 9
Refseq	XP_022680689.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368QCK8	0.0	A0A368QCK8_SETIT; Uncharacterized protein
STRING	Si024734m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-157	GRAS family protein

Link Out ? help Back to Top
Phytozome	Seita.3G066400.1.p