PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G066300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 630aa MW: 71478.9 Da PI: 5.9126 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.1 | 4.9e-112 | 250 | 621 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+ lL++cAea++s+++ ++l++++++++sp+gd +Rla yf+ AL+ar+a+++s++y++l +++ts +++ l+a++lf ++P+ Seita.3G066300.1.p 250 LRALLTQCAEAIASNNQPFDRELVTKIRDHSSPYGDDSHRLAIYFVDALEARIAGTGSQMYQKLMARRTS---TTDMLKAYRLFTAACPFT 337 5789************************************************************999999...89**************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+++ Nq+I++ + rvHiiDf+i G+QWp+L+q +a+R++gpp+lRiTg++ pe+g +++eetg+rLa++Ae ++vpf+++ Seita.3G066300.1.p 338 KVAYYYSNQTIVDVSVERPRVHIIDFGIVFGFQWPSLIQRFANRQGGPPNLRITGIDVPEPGfrPCKKIEETGKRLAEYAEMFNVPFQYQC 428 *************************************************************99999************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 va+r+e++ +++L+++++E+l++n+ +ql +l de+ +++s+rd+vL+++ +++P+v+++ + +ns+ Fl rf eal yys+ fd+l Seita.3G066300.1.p 429 -VASRWENICIKDLNIDKDEVLIINCLHQLNNLSDETEDIDSARDRVLRIMMRMNPEVLIIGVTNGLYNSPFFLPRFREALFYYSSQFDML 518 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ++++ r +e+ri +Er llg ++ nvvacegaer+e+ et+++W+ r+ +aGFk++p+++++ k+ + + + + + v+e+sg+l++gW Seita.3G066300.1.p 519 NSTVIRSHEARILIERDLLGADVFNVVACEGAERIEKPETYKQWQVRILKAGFKQLPVNQTILKSSVARKKDLYHEDFVVDEDSGWLLQGW 609 ******************************************************************99999999899************** PP GRAS 363 kdrpLvsvSaWr 374 k+r L ++S+W+ Seita.3G066300.1.p 610 KGRILHALSSWK 621 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.4 | 224 | 601 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-109 | 250 | 621 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MDSSEYCEIN SNMTLEYINR ILLEEDIDEK PIIYQERDAL QATEKPFYDI LGQVYPSPAK 60 EIVLNSDSQG PDDISNNYHE GACSGSLDND FLGAQGMHLI ANDYGSETDH LSLQFTKGAE 120 EANKFVPIVE KLVVDLGSSE LAVSKQMTQA TVGQKGNHVN KIRSHPHVNL ELLNTKNSKH 180 LAISGSETIR DETFDSVLLC TGQLSRDAAH LREMKAKEAR DSSQIAQSKE YGKGKVKSRA 240 RKQQEEAIDL RALLTQCAEA IASNNQPFDR ELVTKIRDHS SPYGDDSHRL AIYFVDALEA 300 RIAGTGSQMY QKLMARRTST TDMLKAYRLF TAACPFTKVA YYYSNQTIVD VSVERPRVHI 360 IDFGIVFGFQ WPSLIQRFAN RQGGPPNLRI TGIDVPEPGF RPCKKIEETG KRLAEYAEMF 420 NVPFQYQCVA SRWENICIKD LNIDKDEVLI INCLHQLNNL SDETEDIDSA RDRVLRIMMR 480 MNPEVLIIGV TNGLYNSPFF LPRFREALFY YSSQFDMLNS TVIRSHEARI LIERDLLGAD 540 VFNVVACEGA ERIEKPETYK QWQVRILKAG FKQLPVNQTI LKSSVARKKD LYHEDFVVDE 600 DSGWLLQGWK GRILHALSSW KPKESYTNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-57 | 232 | 623 | 1 | 381 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G066300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680798.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A368QCG2 | 0.0 | A0A368QCG2_SETIT; Uncharacterized protein | ||||
STRING | Si024539m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-164 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G066300.1.p |