PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G066200.1.p
Common NameSETIT_024218mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 735aa    MW: 83727 Da    PI: 7.9596
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G066200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.81.4e-1053567261374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+av+++d  la++l++++++++spdgd +qRla+y++ +L+arla+ + ++y +l +++ +    +e +++++l   ++P+l
  Seita.3G066200.1.p 356 LRTLLIHCAQAVAADDRPLATELIKKIRQHSSPDGDCIQRLAFYLVDGLEARLAGIGRQVYLKLLTKRVT---DEELFKIYNLSLAAFPLL 443
                         6789*********************************************************888888877...688889999999****** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         ++s+  aN++Ilea  g+ +vHi+Df++  GlQWp+L+q+++++ + pp+lRiTg++ +++g    e +e+ g+rLa++A+ ++vpf+++ 
  Seita.3G066200.1.p 444 RVSYTFANRTILEASRGQPKVHIVDFGMCFGLQWPSLIQKFSEQ-GVPPKLRITGIDVSRPGfgTLEITEQAGKRLADYANMFKVPFQYQG 533
                         ******************************************95.889**********99999899999********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +++r e++++e+L++++gE+l+Vn+ +q+++l de+v+++s+rd+vLk++++++Pkv+++   + +++s+ F +rf e l +ys+lfd++
  Seita.3G066200.1.p 534 -ISSRYENIQIEDLNIEEGEVLIVNSLYQMKTLGDETVAMNSARDRVLKIMRRMNPKVFILGVVNGSYSSPFFITRFKELLFHYSSLFDMF 623
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++++pr++eer+ +E +l+gre  n+++cegaer+er et+++W++r  +aGF+++p++  + +++  + ++++ + +  +e+sg+l++gW
  Seita.3G066200.1.p 624 DTNIPRDNEERKLIEGRLFGREMLNIISCEGAERTERPETYKQWQARCLKAGFEQLPVDPAILNSILDMTKEIYHEDFVADEDSGWLLQGW 714
                         **************************************************************************999************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r + ++S W+
  Seita.3G066200.1.p 715 KGRVMHAISKWK 726
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.964330706IPR005202Transcription factor GRAS
PfamPF035144.9E-103356726IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MVIEPLSDDL HTITTTEQPY DGSCSSSQQQ LITTHNYRRS DPQFFPQPTN NESNTQLSNL  60
VTIPGMYNVS SNLRQSQLQT SAGFNPDYQR IRSNDNALHH ISRMLMEDID ERVGLHEGEA  120
ALHAAEKTFY DILGQVYPPS WPPLCSNNEV DDPDESSSSN YQKRPRRTSF TSDICSPSML  180
HALPAPLSPY NYGRSLFRPY QPLTSTGRAT RFGFPALQII RGPEDAKGFD KLVIYLDSDK  240
LSICRLTTKA KEVEKSKCAV FQITDHRNNP CTQNLGTREG RSSKQHANTI TCEISQNRKF  300
DRHLLWYRLD CFNETRSLRE LMAKQASMNS TKGQSKGPTQ QKSRGKRQIN KEVVDLRTLL  360
IHCAQAVAAD DRPLATELIK KIRQHSSPDG DCIQRLAFYL VDGLEARLAG IGRQVYLKLL  420
TKRVTDEELF KIYNLSLAAF PLLRVSYTFA NRTILEASRG QPKVHIVDFG MCFGLQWPSL  480
IQKFSEQGVP PKLRITGIDV SRPGFGTLEI TEQAGKRLAD YANMFKVPFQ YQGISSRYEN  540
IQIEDLNIEE GEVLIVNSLY QMKTLGDETV AMNSARDRVL KIMRRMNPKV FILGVVNGSY  600
SSPFFITRFK ELLFHYSSLF DMFDTNIPRD NEERKLIEGR LFGREMLNII SCEGAERTER  660
PETYKQWQAR CLKAGFEQLP VDPAILNSIL DMTKEIYHED FVADEDSGWL LQGWKGRVMH  720
AISKWKPNES CTDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-433377271380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G066200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809503.10.0scarecrow-like protein 30
SwissprotO809331e-140SCL9_ARATH; Scarecrow-like protein 9
TrEMBLK3ZCE30.0K3ZCE3_SETIT; Uncharacterized protein
STRINGSi024218m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-142GRAS family protein