PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G065700.1.p | ||||||||
Common Name | SETIT_024059mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 31928.8 Da PI: 6.8561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 69 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++aa+++l+g Seita.3G065700.1.p 69 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 119 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-28 | 70 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.323 | 70 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-15 | 71 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 71 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-19 | 71 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.7E-12 | 71 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDVVVAQQQQ QQQRLPLPPF HLVSQQPPQH QQGGSGKVAG GGGGRKCCPL RRSRKGCMKG 60 KGGPENQRCP FRGVRQRTWG KWVAEIREPN RGARLWLGTF ATALDAARAY DAAARALYGD 120 CARLNLLPAA ALPAAAAAAP TNSNSMVVKA SPAASPSSSP DAAVADHHHQ YYDYKQEPTT 180 MAMNMMMVAA VPSPSCCSAD GASPNSNYSN SSSSAAPTPT AMQQMMMADE LAAAEQHQQA 240 EADDFEDYVT RLPKAEDFGL GGFQEVPPEV FDEAAGGGIW DHTVGWPSAM MSGGPSQIVP 300 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 71 | 126 | 6 | 62 | ATERF1 |
3gcc_A | 2e-13 | 71 | 126 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G065700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 3e-98 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 3e-98 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 3e-98 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 3e-98 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 3e-98 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 3e-98 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680796.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | Q84ZA1 | 2e-71 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A368QC40 | 0.0 | A0A368QC40_SETIT; Uncharacterized protein | ||||
STRING | Si024059m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 4e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G065700.1.p |
Publications ? help Back to Top | |||
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