PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G058200.1.p | ||||||||
Common Name | SETIT_023710mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 111aa MW: 12812.3 Da PI: 9.1065 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.9e-10 | 44 | 87 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ +++++ + +G g+Wk I+r + + +t+ q+ s+ qky Seita.3G058200.1.p 44 WTIEEHRQFLHGLRWYGLGNWKNISRDFITIKTPVQVSSHAQKY 87 *****************************889***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.137 | 36 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-14 | 40 | 93 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-8 | 42 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-13 | 42 | 90 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 5.80E-7 | 44 | 88 | No hit | No description |
Pfam | PF00249 | 9.0E-7 | 44 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MYSTQQPIDP KLNGEWSASE MVQEAPHSQV IIPQQERHHN GRFWTIEEHR QFLHGLRWYG 60 LGNWKNISRD FITIKTPVQV SSHAQKYFCR LERTSSSYGS NSQIQGNLVG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G058200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440566.1 | 3e-28 | transcription factor SRM1 | ||||
Swissprot | Q8S9H7 | 2e-16 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | K3ZAY9 | 4e-77 | K3ZAY9_SETIT; Uncharacterized protein | ||||
STRING | Si023710m | 7e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 9e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G058200.1.p |
Publications ? help Back to Top | |||
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