PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G058100.1.p | ||||||||
Common Name | LOC101780786, SETIT_025176mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 35056.9 Da PI: 4.7469 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.9e-13 | 139 | 182 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ +++++ +++G g Wk I+r + +++t+ q+ s+ qky Seita.3G058100.1.p 139 WTIEEHRQFLCGLREYGRGKWKDISRDFVTTKTPVQVSSHAQKY 182 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.034 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.96E-15 | 133 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-9 | 135 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-9 | 135 | 185 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.1E-13 | 136 | 185 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 139 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-7 | 139 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MDRKFNGEWS ACDIKIVKSL IASRNANNNY ADDLNKKHND IVNDIQARFP WKERDQVIEL 60 YVELVVEMIS PTQSGNQFVV ATNNSVNDNF GIPVEDPNMD TLYAYMSNKT PESMRMVVEA 120 PQSQAIIPQQ ERQQKGRFWT IEEHRQFLCG LREYGRGKWK DISRDFVTTK TPVQVSSHAQ 180 KYFRRLERTS EKQRYSINDV GLYDAEPWVL NNSSSWEALA FTGDAYNPNF YGTGRQLSTM 240 NNFSQVWPPF LYGADQASSS QATTWAGQQM GATALALEGA GSQMAWTGDQ QGDFLPEQWM 300 DMDKEY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G058100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680780.1 | 0.0 | transcription factor SRM1 | ||||
TrEMBL | K3ZF27 | 0.0 | K3ZF27_SETIT; Uncharacterized protein | ||||
STRING | Si025176m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-22 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G058100.1.p |
Entrez Gene | 101780786 |