PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G055700.1.p

Common Name

LOC101773457, SETIT_021472mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 578aa MW: 60556.9 Da PI: 8.1199

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G055700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.8e-16	400	446	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Seita.3G055700.1.p 400 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 446 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.41E-18	392	450	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-20	393	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-20	393	456	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.006	396	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-14	400	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-17	402	451	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MGRPRPHLFL QTHPSLASAP AAAAVGGASL FLNCSPTSLL LPPSHAHKQQ QFVLACAPTS 60 NSLSSPLCSP APRHRSSSSV RSILLHLSPR GARMIGPGDE LAELLWDNGP ALRRAPPPFQ 120 PFTCSAAGSS RAHELKRHAA AAAGMASVPL GAHDAGGFPV HDDDDAVPWL HCPVIVDDGD 180 TAPLPPEYCA GLLSEYPGLP GAAPPASPHH GAAVPASRAA PPEAAAKQAP PSAGEGVMNF 240 TFFSRPLQQR PQASAAAAPS NPVESTVVQA ATNRLRSTPL FSEQRMAWLQ PPKAPRATAA 300 GAPPAPQAPL PPELRHGEAA TVTQRRLQPE ARAPDAAAGP AAVTTSSVCS GNGDRSQPKR 360 SSHHQLPDCS VSPDEDLDDE GGATRRSESR SNKRSRTAEV HNLSERRRRD RINEKMRALQ 420 ELIPNCNKID KASMLEEAIE YLKTLQLQVQ MMSMGTGLCV PPMLLPAMQM PHPMAAHFPH 480 LGMGLGFSMG AAAAAFDMAR AAGVHFPCPP MAMPPGPMFG VPGQAMPPPA AAAFAHMATA 540 PPEQMEVAPA RRGAEADQPP VPVVTQGDQK QQHPKQT*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MGRPRPHLFL QTHPSLASAP AAAAVGGASL FLNCSPTSLL LPPSHAHKQQ QFVLACAPTS  60
NSLSSPLCSP APRHRSSSSV RSILLHLSPR GARMIGPGDE LAELLWDNGP ALRRAPPPFQ  120
PFTCSAAGSS RAHELKRHAA AAAGMASVPL GAHDAGGFPV HDDDDAVPWL HCPVIVDDGD  180
TAPLPPEYCA GLLSEYPGLP GAAPPASPHH GAAVPASRAA PPEAAAKQAP PSAGEGVMNF  240
TFFSRPLQQR PQASAAAAPS NPVESTVVQA ATNRLRSTPL FSEQRMAWLQ PPKAPRATAA  300
GAPPAPQAPL PPELRHGEAA TVTQRRLQPE ARAPDAAAGP AAVTTSSVCS GNGDRSQPKR  360
SSHHQLPDCS VSPDEDLDDE GGATRRSESR SNKRSRTAEV HNLSERRRRD RINEKMRALQ  420
ELIPNCNKID KASMLEEAIE YLKTLQLQVQ MMSMGTGLCV PPMLLPAMQM PHPMAAHFPH  480
LGMGLGFSMG AAAAAFDMAR AAGVHFPCPP MAMPPGPMFG VPGQAMPPPA AAAFAHMATA  540
PPEQMEVAPA RRGAEADQPP VPVVTQGDQK QQHPKQT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	404	409	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G055700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287958	2e-73	AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960433.2	0.0	transcription factor APG
Swissprot	Q0JNI9	2e-88	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	K3Z4X6	0.0	K3Z4X6_SETIT; Uncharacterized protein
STRING	Si021472m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-32	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Seita.3G055700.1.p
Entrez Gene	101773457

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]