PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G055200.1.p
Common NameSETIT_024783mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 478aa    MW: 51327.1 Da    PI: 4.1205
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G055200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.9e-131352342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i +k  rq  f kR ++++ KA  LS+LC++++av++++ 
  Seita.3G055200.1.p 13 IAEKAVRQAAFRKRHTTLFDKARDLSILCQVQAAVVVYGR 52
                        678899********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-13162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.722351IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-16696IPR002100Transcription factor, MADS-box
CDDcd002663.29E-19787No hitNo description
PfamPF003191.6E-111352IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MPRRGGKIKI QWIAEKAVRQ AAFRKRHTTL FDKARDLSIL CQVQAAVVVY GRGEAEPKVW  60
PGVPEVTEIL QRYPDLPGSL KEAHKLDNEI FARQRAKKMR RKVDSCKATA RRLEVNLVLN  120
DVSIGRRRDF DDLPRELTAA VVSVLNAFRS VTADRVNFLR SADAQEAAFS PPLEEAAALM  180
ALREPPMVPP VAMAAPVVAN APFMQPTPPQ SALVVPLEEE EEPPMVPPLA MAPFVADAPL  240
LLPAPELEPA PLQSELVVSP VPELEDPQMI ADALLLLELE LELEPELAPA QSELVEAPAP  300
APQEPPMVAE ESLLPLLAPE PEPAPLQSEV VVAPAPEPQD PQMIADALLL PLAPEPEPAP  360
LQSELVEAPP PAPQAPPTVA DAPLLLPAPE PASELVVEPP MVADASLLLP AVEPESQATA  420
AGMGADELLN LDAEPRNGSF LLEMADAIVD DGSGRQATAE DVDRLLREHG LESFKPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G055200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304121.16e-64MADS-box transcription factor 56
TrEMBLA0A368QBR70.0A0A368QBR7_SETIT; Uncharacterized protein
STRINGSi024783m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2104367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-13M-type_MADS family protein