PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G054500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 525aa    MW: 54255.4 Da    PI: 7.0241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G054500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30253311259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Seita.3G054500.1.p 253 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGTHNHQ 311
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33237313IPR003657WRKY domain
SuperFamilySSF1182901.05E-27245313IPR003657WRKY domain
PROSITE profilePS5081129.321247313IPR003657WRKY domain
SMARTSM007741.7E-36252312IPR003657WRKY domain
PfamPF031061.5E-26254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDLVPKQEQH KEEEDKEEAM ILAEHGDQAF GHAGGGRRRS EIKEVDFFST GGAHRRNDDD  60
GNGRDGRSRE AGALGRGNTT VNTALDLLTT AAATPVNAGE GAAAGAASDH NKQMAVATVE  120
GELRQAGEEN RRLRRMLDDL TRSHSALYHQ LIQAQQHQQA SGSANSMLPA TMPAGVQFMD  180
PRMAPAIRAG APASFDGDRG DSDGGSGSGG EADQNKQDGT AGTPERGENA AAEAPLRRAR  240
VSVRARSEAP MISDGCQWRK YGQKMAKGNP CPRAYYRCTM ATGCPVRKQV QRCAEDKAVL  300
ITTYEGTHNH QLPPAAAAMA KTTSAAAAML LSGPAASRDA LFAGHHVAAT APAPLFQSYP  360
YASAAMGATL SASAPFPTIT LDLTHSPPAS AAGLHLQHRP PALPAMPFPM YGFPAAAHRP  420
AVPLLPQPPT AVSLGMMDGR NRAALETMTA AITSDPNFTT ALAAALSTIM GGGAEAAPRG  480
GAGADAGDGN NGGSGTEPPA TAAAAGARET ALHALLQRLH DSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22239315176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G054500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699836.10.0probable WRKY transcription factor 47
TrEMBLA0A368QBQ30.0A0A368QBQ3_SETIT; Uncharacterized protein
STRINGSi022468m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-52WRKY family protein