PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G050400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TALE | ||||||||
Protein Properties | Length: 306aa MW: 32973.1 Da PI: 5.1397 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 237 | 270 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ Seita.3G050400.1.p 237 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 270 59*****************************885 PP | |||||||
2 | ELK | 33.1 | 1.2e-11 | 190 | 211 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Seita.3G050400.1.p 190 ELKEMLLKKYSGCLSRLRSEFL 211 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-20 | 52 | 96 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-20 | 54 | 94 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.2E-25 | 100 | 151 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.0E-22 | 104 | 150 | IPR005541 | KNOX2 |
SMART | SM01188 | 1900 | 109 | 129 | IPR005539 | ELK domain |
SMART | SM01188 | 3.6E-6 | 190 | 211 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.4E-8 | 190 | 211 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 190 | 210 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.681 | 210 | 273 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-14 | 212 | 277 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-20 | 212 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 215 | 275 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.36E-13 | 222 | 274 | No hit | No description |
Pfam | PF05920 | 5.1E-17 | 230 | 269 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 248 | 271 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEDLYSIHPG ISRAGGGGSA AAASEASGVA GGAGSPPPPP PQPPPPPADL TELVKAQIAG 60 HPRYPSLLSA YIECRKVGAP PEVATLLEEI GRERRAAAAA GGEVGLDPEL DEFMEAYCGV 120 LERYKEELSR PFDEAASFLS SVRTQLSTLC GGAASLSDEM VGSSEDEPCS GDTDATDLGQ 180 EHSSRLADRE LKEMLLKKYS GCLSRLRSEF LKKRKKGKLP KDARSALMDW WNTHYRWPYP 240 TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGGS SSGTTLYFDT 300 GTIGP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 214 | LRSEFLKKRK |
2 | 211 | 215 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G050400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF457118 | 0.0 | AF457118.1 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a) mRNA, complete cds. | |||
GenBank | BT085252 | 0.0 | BT085252.1 Zea mays full-length cDNA clone ZM_BFb0343E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960385.1 | 0.0 | homeobox protein knotted-1-like 10 | ||||
Swissprot | A2Y007 | 1e-150 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 1e-150 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q9FP29 | 1e-151 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A368QBI1 | 0.0 | A0A368QBI1_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G094241_P01 | 1e-178 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 8e-80 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G050400.1.p |