PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G048100.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 1709aa MW: 184072 Da PI: 6.2931

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G048100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	847	889	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + ++++G++ +++I++ + ++t +c+++++k+ Seita.3G048100.2.p 847 PWTQEEKEIFMEMFAKFGKD-FSKISSFLM-HKTTADCVEFYYKH 889 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	3.14E-5	292	391	No hit	No description
SuperFamily	SSF46689	2.17E-14	833	892	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.475	843	894	IPR017884	SANT domain
SMART	SM00717	3.1E-9	844	892	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	845	891	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	846	889	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.354	1053	1104	IPR017884	SANT domain
SMART	SM00717	3.5E-5	1054	1102	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.11E-8	1057	1104	IPR009057	Homeodomain-like
CDD	cd00167	8.67E-4	1058	1096	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1709 aa Download sequence Send to blast
MPPPPPDRRD YLYREGRRHD GGGAGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR 60 RAPSSASSEG YYRQGGGAYD RSYPDEPPLG YTPSRSDRYW VEDDGGGYKS FGRYGGGGGG 120 RRDGREVRGS YRRSPFRGYG SDFSRNHPEQ PPPPPPRRSP LRSVAVPICY DPPGNRVDRG 180 DRDNLPRVTP WRRRESRSEA ADAAGAGPVS LGQTTRPASS EKEASAQPPA GSAPLGTEDE 240 APRKKARLGW GQGLAKYEKQ KVHGPADPAE AVADGSPAEA EQKTAFPVPV LPAPPASAPA 300 PEPPAAPAPP PPAVPAPPPP AAPAPLPEPP AEPVPEPPAA PAPVLVPVPA PAPAPVPAPA 360 PAPVPAPAPA PVPAPAFCTS PVDTPSSAPP YCTSAPEDKS CEQTGTVTNP TKDVPEAADK 420 AVNNEFSINL DQLGDDPINS LANMLADLLQ HDDSCSGDSK GPTSTSKLLL LKESISKEIE 480 KTELEIDLLE GELKSVNTEA GTAVEGSPTG VTYAENLSPS SGTSKVPESA EISQASHVMK 540 EPGELIPSPK PPVVQDADVK GADMMEIEPA PVRNAKTLSS EESAVSPGVA EGPVCAAADL 600 SPLKASERAG SQNDMHNDRL ETSSCHVNAD SIKTEISDDI PVTQCSDHDH KYSLFGSVTS 660 ANNNIAKVMN ESLFKSLPAD TPHLDLLASS HLLSQRKNDH HIRERLGVCK NRLRLKEQIL 720 TLKFKAYRHL WKEDLRLLSA KKQRPKSNKR IDQSNRTSHI GSQRQRSSNR SRLAMPAGNL 780 STFSTPEMSD VASKLFSEFQ IKRCRNYLKM PALIIDEREK ERSRFVSKNG FVDDPVLVEK 840 ERVMINPWTQ EEKEIFMEMF AKFGKDFSKI SSFLMHKTTA DCVEFYYKHH KSDSFREVKK 900 LLDLRQQQPA SNFLGAKSGK KWNPEANAAS LDMLGVASVV AAHGLEYANR VEKISAKSLI 960 RTAYGSNVSF AAKKSSDMEC IDNVPLHERE SVAADVLAGI CSTLSPEGMG SCITSSADPG 1020 QKISMTRMEH GLAPEIDRSI DEEDTLSDQE CEVDPVDWND DEKSVFIEAM NNYGKDFARI 1080 SSCVKSKSYE QCKVFFSKAR KSLGLDLIHQ GAADVSMPTS DTNGGRSDTD EACAAEMDSA 1140 ICSTQSCSEI EKDVCPTEKA IGGIITKQPE LNISNGFDVV DGKTEEDEKK ADKNCSIVDH 1200 GRFNEDTHQV ACGTIDINCP ESTEKLQGKD DVVDQVNMQN NSAISSSPEQ AMAAHPEVRS 1260 SLHSVEVLHQ TNKAPLGSGT DASQMEECSN QALDNKLRKA GNSGASACIA SDISTKDNVH 1320 FANMTGASTI SPAFPPSYKH SVPADMPPTK PKPLVTPLTP KDLMPVQFSS AVPDPTVICF 1380 DGIASITMPN FDDSGNRVSS ALGAKDMSKY PAFKDPTGNQ HDALFRNVDG YTNHLTTKLP 1440 FFSERTASGT VSTSQTDRFT LTKFQNGRSS SLGLPNTSDG IQWARKHEEV LQGSLRSCSH 1500 NTSSEGDEQQ KRPGDVKLFG KILSHQSSLQ SPVPPCNGNK SKPPSPKIDI SSVRSLNNPR 1560 DRVVCSSRPG ITHLGLEERT AKSYGHLDGS TTQPEPLLMM AKCQSLAGVP FYSAKNGTVG 1620 VFSDYQQPSI QPHQSDPKRL ERFSDPQKRN GVEFISGFQQ PSKISRFGGA GILVSGVSDP 1680 VAALKAQYGP GSKVMGSDVD PWKDIGSR*

Sequence ? help Back to Top

Protein Sequence Length: 1709 aa Download sequence Send to blast

MPPPPPDRRD YLYREGRRHD GGGAGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR  60
RAPSSASSEG YYRQGGGAYD RSYPDEPPLG YTPSRSDRYW VEDDGGGYKS FGRYGGGGGG  120
RRDGREVRGS YRRSPFRGYG SDFSRNHPEQ PPPPPPRRSP LRSVAVPICY DPPGNRVDRG  180
DRDNLPRVTP WRRRESRSEA ADAAGAGPVS LGQTTRPASS EKEASAQPPA GSAPLGTEDE  240
APRKKARLGW GQGLAKYEKQ KVHGPADPAE AVADGSPAEA EQKTAFPVPV LPAPPASAPA  300
PEPPAAPAPP PPAVPAPPPP AAPAPLPEPP AEPVPEPPAA PAPVLVPVPA PAPAPVPAPA  360
PAPVPAPAPA PVPAPAFCTS PVDTPSSAPP YCTSAPEDKS CEQTGTVTNP TKDVPEAADK  420
AVNNEFSINL DQLGDDPINS LANMLADLLQ HDDSCSGDSK GPTSTSKLLL LKESISKEIE  480
KTELEIDLLE GELKSVNTEA GTAVEGSPTG VTYAENLSPS SGTSKVPESA EISQASHVMK  540
EPGELIPSPK PPVVQDADVK GADMMEIEPA PVRNAKTLSS EESAVSPGVA EGPVCAAADL  600
SPLKASERAG SQNDMHNDRL ETSSCHVNAD SIKTEISDDI PVTQCSDHDH KYSLFGSVTS  660
ANNNIAKVMN ESLFKSLPAD TPHLDLLASS HLLSQRKNDH HIRERLGVCK NRLRLKEQIL  720
TLKFKAYRHL WKEDLRLLSA KKQRPKSNKR IDQSNRTSHI GSQRQRSSNR SRLAMPAGNL  780
STFSTPEMSD VASKLFSEFQ IKRCRNYLKM PALIIDEREK ERSRFVSKNG FVDDPVLVEK  840
ERVMINPWTQ EEKEIFMEMF AKFGKDFSKI SSFLMHKTTA DCVEFYYKHH KSDSFREVKK  900
LLDLRQQQPA SNFLGAKSGK KWNPEANAAS LDMLGVASVV AAHGLEYANR VEKISAKSLI  960
RTAYGSNVSF AAKKSSDMEC IDNVPLHERE SVAADVLAGI CSTLSPEGMG SCITSSADPG  1020
QKISMTRMEH GLAPEIDRSI DEEDTLSDQE CEVDPVDWND DEKSVFIEAM NNYGKDFARI  1080
SSCVKSKSYE QCKVFFSKAR KSLGLDLIHQ GAADVSMPTS DTNGGRSDTD EACAAEMDSA  1140
ICSTQSCSEI EKDVCPTEKA IGGIITKQPE LNISNGFDVV DGKTEEDEKK ADKNCSIVDH  1200
GRFNEDTHQV ACGTIDINCP ESTEKLQGKD DVVDQVNMQN NSAISSSPEQ AMAAHPEVRS  1260
SLHSVEVLHQ TNKAPLGSGT DASQMEECSN QALDNKLRKA GNSGASACIA SDISTKDNVH  1320
FANMTGASTI SPAFPPSYKH SVPADMPPTK PKPLVTPLTP KDLMPVQFSS AVPDPTVICF  1380
DGIASITMPN FDDSGNRVSS ALGAKDMSKY PAFKDPTGNQ HDALFRNVDG YTNHLTTKLP  1440
FFSERTASGT VSTSQTDRFT LTKFQNGRSS SLGLPNTSDG IQWARKHEEV LQGSLRSCSH  1500
NTSSEGDEQQ KRPGDVKLFG KILSHQSSLQ SPVPPCNGNK SKPPSPKIDI SSVRSLNNPR  1560
DRVVCSSRPG ITHLGLEERT AKSYGHLDGS TTQPEPLLMM AKCQSLAGVP FYSAKNGTVG  1620
VFSDYQQPSI QPHQSDPKRL ERFSDPQKRN GVEFISGFQQ PSKISRFGGA GILVSGVSDP  1680
VAALKAQYGP GSKVMGSDVD PWKDIGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	6e-16	805	896	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	6e-16	805	896	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G048100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960366.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_004960367.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_012700232.1	0.0	uncharacterized protein LOC101781442 isoform X1
TrEMBL	A0A368QBV9	0.0	A0A368QBV9_SETIT; Uncharacterized protein
STRING	GRMZM2G089406_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Seita.3G048100.2.p