PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G045800.1.p | ||||||||
Common Name | LOC101770505, SETIT_024430mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 21796.7 Da PI: 6.698 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 7.6e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ lk Seita.3G045800.1.p 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQDLPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQRQVNDLK 126 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Seita.3G045800.1.p 127 AQLARAHAE 135 *****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.049 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDSSSSDTTA TAALPHGGGA STAPTSPPAA AVVLSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFATAHR VFGASNIIKL LQDLPEEHRA DAVSSMVYEA SARIRDPVYG CAGAICQLQR 120 QVNDLKAQLA RAHAELAGAR AQHAHLLALL CVEVAAASPA YCGAVDYTSS QLAAAATPAA 180 HADALYVVDG GSGLQLQASP VSWADEPLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-46 | 23 | 136 | 2 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-46 | 23 | 136 | 2 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G045800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079021 | 7e-77 | AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence. | |||
GenBank | AC093089 | 7e-77 | AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence. | |||
GenBank | AP014961 | 7e-77 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 7e-77 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960340.1 | 1e-150 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 5e-61 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | K3ZCZ9 | 1e-148 | K3ZCZ9_SETIT; Uncharacterized protein | ||||
STRING | Si024430m | 1e-149 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-46 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G045800.1.p |
Entrez Gene | 101770505 |