PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G029300.1.p
Common NameLOC101785208, SETIT_022785mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 303aa    MW: 31352.4 Da    PI: 9.7909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07105130227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C  +     Ck+G++C+FaHg+
  Seita.3G029300.1.p 105 KTRMCTKYNTVEGCKFGEKCHFAHGE 130
                         8999999999999***********96 PP
2zf-CCCH38.12.6e-12269294127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC +f + GtC +GdrC+FaHg+
  Seita.3G029300.1.p 269 YKTKLCENFVK-GTCTFGDRCHFAHGE 294
                         9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-73562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53862IPR000571Zinc finger, CCCH-type
PfamPF146081.54562No hitNo description
SMARTSM003560.39103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-8104133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12105134IPR000571Zinc finger, CCCH-type
PfamPF146080.042109129No hitNo description
SuperFamilySSF547911.08E-13167242IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.2E-14171241IPR004088K Homology domain, type 1
SMARTSM003221.6E-9171241IPR004087K Homology domain
PROSITE profilePS5008413.754172236IPR004088K Homology domain, type 1
PfamPF000137.8E-10174237IPR004088K Homology domain, type 1
CDDcd001057.26E-13174236No hitNo description
Gene3DG3DSA:4.10.1000.103.3E-15267298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9267298IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488268295IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10269294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEGAAAARKR SRPETANGVA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLGSP AVSAPARASV DHAAVANSHP ASTGKTRMCT KYNTVEGCKF  120
GEKCHFAHGE RELGRPAYMS HEGPPMGGRY GGRPEPPPPV AMGPPAGNFG ASATAKISVD  180
ASLAGGIIGK GGVNTKQICR VAGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI  240
ASISASMPPK APPAPAGGRG GAPGGRSNYK TKLCENFVKG TCTFGDRCHF AHGENEQRRG  300
AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G029300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960205.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-161C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLK3Z8B50.0K3Z8B5_SETIT; Uncharacterized protein
STRINGSi022785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-50C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]