PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G028100.4.p | ||||||||
Common Name | LOC101781038, SETIT_021121mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 937aa MW: 103074 Da PI: 6.149 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.1 | 5.9e-22 | 143 | 243 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++i ++++r++lt+GW+ Fv a++Lk+gD+v+F Seita.3G028100.4.p 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNLWTFRHI-YRQPKRHLLTTGWSLFVGAKRLKAGDSVLFI-- 229 89*********************999*****9555555.49***************7.5667799************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+v+v+r+ Seita.3G028100.4.p 230 RDEKSQLLVGVRRA 243 4577778*****97 PP | |||||||
2 | Auxin_resp | 109.5 | 3.5e-36 | 268 | 350 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++ F+++YnPr+s+s Fv+++++++ka++++ svGmRf +fete+ss+rr++Gtvvg+sd+dp+rWpnSkWr+L+ Seita.3G028100.4.p 268 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYMQPSVGMRFATMFETEESSKRRCTGTVVGISDYDPMRWPNSKWRNLQ 350 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-42 | 133 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-38 | 136 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.57E-19 | 142 | 242 | No hit | No description |
SMART | SM01019 | 1.4E-20 | 143 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-19 | 143 | 243 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.76 | 143 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-31 | 268 | 350 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.737 | 832 | 916 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.0E-8 | 836 | 919 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.1E-8 | 851 | 911 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 937 aa Download sequence Send to blast |
MASSQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY 60 FPQGHSEQVA ATTKKVPNSR IPNYPSLPSQ LLCQVHNITL HADKETDEIY AQMTLQPVHS 120 ETEVFPIPSL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN 180 QELIVRDLHD NLWTFRHIYR QPKRHLLTTG WSLFVGAKRL KAGDSVLFIR DEKSQLLVGV 240 RRATRQQPAL SSSVLSTDSM HIGVLAAAAH AASSGGSFTI YYNPRTSPSP FVIPLARYNK 300 ATYMQPSVGM RFATMFETEE SSKRRCTGTV VGISDYDPMR WPNSKWRNLQ VEWDEHGYGE 360 RPERVSLWDI ETPENSLVFS SPLNSKRQCL PSYGVPGLQI GSVNMSSIPR AQGNPFGNLQ 420 HMPGIGSELA LMLLNQSGQN LGSPLACQQS SFSSIIQNVN HGYIPPSTFG ASTGSIKQES 480 MLSNEAQQQL SAPNIQKDDQ QGIDSTSAQE LDVRARGPRN TDSYSSQSIS DQNSKGEHRT 540 KTRRSKKGLS HKSISDKSEL SSVPSQICDD QRHGSEPKLV DCETEQVNCG NNEDSSGALT 600 RGGFAGEPQV QQVEQHELLA PPKFEPSKSP DGGKSVSSFP NQGCSPQFFE GLDWVIQPSY 660 YQDSNGIHSV SASENIFNQS ADITSTINAD TMEAFQNSCL SECFPNSVQE FISSPDLNSL 720 TFMSPDMQHL DGQHDVNNLP STSNSYVQMS YSEESGNQSA SLSGLHMEAI HINSSCSEPM 780 TTGSFDAGMF SKLPNLRDSQ VLPLQEIHNS SMGTPSCSMD AASVKPIKPP VRTYTKVQKL 840 GSVGRSIDVT RFRDYHELRS AIACMFGLQG KLEHPGSSDW KLVYVDYEND VLLVGDDPWE 900 EFINCVRCIR ILSPSEVQQM SENGVHVLND CIQIAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 17 | 373 | 31 | 390 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G028100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660379.1 | 0.0 | auxin response factor 11 isoform X2 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | A0A368QB51 | 0.0 | A0A368QB51_SETIT; Auxin response factor | ||||
STRING | Si021121m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G028100.4.p |
Entrez Gene | 101781038 |
Publications ? help Back to Top | |||
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