PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G020200.2.p | ||||||||
Common Name | LOC101782524, SETIT_021446mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 642aa MW: 72023 Da PI: 5.094 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 54 | 77 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C GdrC+F Hgp Seita.3G020200.2.p 54 MVPCYYFQK-GNCLKGDRCPFYHGP 77 789******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.699 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.4 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.5E-5 | 5 | 24 | No hit | No description |
SMART | SM00356 | 4.1E-6 | 51 | 77 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 55 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MNPRDCWYWL NGSCLNPKCS FRHPPIDGLF SGAPTPGVPP VSSHYGAYNS GKQMVPCYYF 60 QKGNCLKGDR CPFYHGPQGA GNNPTEQVAK VSSFPVELPQ AKKNEESAAP DNSTQQGARI 120 IDDRTMVHVA KSVIGAIPTE LSSNAVKSRP NSEQAPNNTL AAKKSFTTEE DHPMHYENLL 180 PVEGDSVQEW NQSFQMPPTD DLPQNSREAD DFLGESSPGF DVLVDNDAEG AAYLHDEEDF 240 GRDMYPVEDY EYAPADFDIR AQHESEQFNG MGENGQIGQL CDGYERKRRR SSSERSMDRP 300 FHSDRRFLHR GPDRDGIDGS DLRHQLRRRR ISGPSTAISP ERANGGRHWR DERYRESAHG 360 GHHMHSDRRQ GPRGSTLSSR LQARIKLPGR SPDRVDTRFE DERDRRLRER FSPAARLADF 420 HGSRHRESGQ HQERSHRRSS ELVSSARHAD GLSFKRDSVD SARFAARRNF GEPRKANGIV 480 ESEASLDFEG PKPLSVILQR KREAAGGNNL ASSYDKSAEA AVMQAGSLVE SEKKGCDNII 540 ISENCKSGSG DEEYKEEYHV PVEGHGQSSS HGDKFEVEDA AEVDPERNQE ADNYDQREGE 600 SDDYETMEGH DYKSEDENAY QDDEEFDDDD DFARKVGVVF S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 285 | 289 | RKRRR |
2 | 285 | 290 | RKRRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G020200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660437.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | K3Z4H8 | 0.0 | K3Z4H8_SETIT; Uncharacterized protein | ||||
STRING | Si021446m | 0.0 | (Setaria italica) |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G020200.2.p |
Entrez Gene | 101782524 |
Publications ? help Back to Top | |||
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