PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.3G016200.1.p | ||||||||
Common Name | LOC101770801, SETIT_022762mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 31591.7 Da PI: 5.4001 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.5e-08 | 20 | 67 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrw 44 g+WT e ++ + +av+ + + +W++ a+ + g+t+ +++ ++ Seita.3G016200.1.p 20 GAWTREQEKAFENAVATMAEDgddgdaRWEKLAEAVE-GKTADEVRRHY 67 89*****************99****************.**********9 PP | |||||||
2 | Myb_DNA-binding | 39.7 | 1.1e-12 | 133 | 177 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Seita.3G016200.1.p 133 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 177 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.992 | 14 | 71 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.0E-5 | 18 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-4 | 20 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-6 | 20 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.36E-8 | 22 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-6 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 126 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-16 | 128 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-17 | 130 | 180 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.3E-11 | 130 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-10 | 133 | 178 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 133 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-11 | 133 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MAVEEASSSG GGGDGEEGSG AWTREQEKAF ENAVATMAED GDDGDARWEK LAEAVEGKTA 60 DEVRRHYEFL VEDVEGIDSG RVPLPTYAAD GGAEEGGTGG GGGGGKKGSG GGGGHGEKGS 120 AKSVEQERRK GIAWTEDEHR LFLLGLEKYG KGDWRSISRN FVISRTPTQV ASHAQKYFIR 180 LNSINRERRR SSIHDITSVN NGDASAVQGP ITGQTNGQAA NPGKPSKQSP QPANAPPGVD 240 AYGTTIGQPV GGPLVSAVGT PVTLPVPAPP HMAYGMHTPV PGAVVPGAPV NIAPMPYPMP 300 PPSSHG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-16 | 18 | 92 | 6 | 78 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 103 | 111 | GGKKGSGGG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.3G016200.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF679443 | 0.0 | HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960078.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-102 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | K3Z892 | 0.0 | K3Z892_SETIT; Uncharacterized protein | ||||
STRING | Si022762m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-74 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.3G016200.1.p |
Entrez Gene | 101770801 |
Publications ? help Back to Top | |||
---|---|---|---|
|