PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G444900.2.p | ||||||||
Common Name | SETIT_030461mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 335aa MW: 36994.9 Da PI: 7.3977 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.8e-09 | 280 | 328 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 r++W + E++ l+++v+++G+g+Wk I + + R+ ++k+++++ Seita.2G444900.2.p 280 RKKWIEIEEKTLLEGVEKYGKGNWKDIKMAYPvifEERSTIDLKDKFRN 328 7899999****************************99**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.324 | 275 | 334 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-10 | 277 | 329 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-6 | 279 | 332 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-7 | 280 | 329 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.50E-19 | 281 | 331 | No hit | No description |
SuperFamily | SSF46689 | 3.51E-12 | 282 | 331 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MPPLAAADAF LVLEFIAGNR RIPHAVFTAI LGSLPSSSPR TSPRLRKALV LRALHAALHP 60 EDASCSFTLL RKARRVLADP DAAACFPYQL SLAENEQEDG ARAAVADLKR LLDHEWANLP 120 PSTLELAADR LAGHRSLHAW AAADHANRTK LRLLVGESTE REILAKLMQD DNANNANEAD 180 VAQRNHEADP SKKSSEAGCA QEGTAEHQNA LIGGAQGVQL PEKSVPASKK RSLMERHPNA 240 STYEWDGLDD SNDDRPLGKR ELPPFERKPH PAPTCAHKVR KKWIEIEEKT LLEGVEKYGK 300 GNWKDIKMAY PVIFEERSTI DLKDKFRNME RLSA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G444900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958819.1 | 0.0 | telomeric repeat-binding factor 2 | ||||
TrEMBL | A0A368Q9Z0 | 0.0 | A0A368Q9Z0_SETIT; Uncharacterized protein | ||||
STRING | Si030461m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 6e-11 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G444900.2.p |