PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G444900.1.p | ||||||||
Common Name | SETIT_030461mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 339aa MW: 37424.3 Da PI: 7.1538 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5e-07 | 280 | 315 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...k 33 r++W + E++ l+++v+++G+g+Wk I + + Seita.2G444900.1.p 280 RKKWIEIEEKTLLEGVEKYGKGNWKDIKMAYPvifE 315 7899999********************877765554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-8 | 277 | 321 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 280 | 319 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.22E-17 | 281 | 335 | No hit | No description |
SuperFamily | SSF46689 | 3.66E-9 | 282 | 335 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MPPLAAADAF LVLEFIAGNR RIPHAVFTAI LGSLPSSSPR TSPRLRKALV LRALHAALHP 60 EDASCSFTLL RKARRVLADP DAAACFPYQL SLAENEQEDG ARAAVADLKR LLDHEWANLP 120 PSTLELAADR LAGHRSLHAW AAADHANRTK LRLLVGESTE REILAKLMQD DNANNANEAD 180 VAQRNHEADP SKKSSEAGCA QEGTAEHQNA LIGGAQGVQL PEKSVPASKK RSLMERHPNA 240 STYEWDGLDD SNDDRPLGKR ELPPFERKPH PAPTCAHKVR KKWIEIEEKT LLEGVEKYGK 300 GNWKDIKMAY PVIFEERSTS DVQIDLKDKF RNMERLSA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G444900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958819.1 | 0.0 | telomeric repeat-binding factor 2 | ||||
TrEMBL | A0A368QA46 | 0.0 | A0A368QA46_SETIT; Uncharacterized protein | ||||
STRING | Si030461m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13998 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-09 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G444900.1.p |