PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G438700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 335aa MW: 37326.2 Da PI: 9.3389

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G438700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	50	89	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ Seita.2G438700.1.p 50 KTLRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 89 7889************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	46	109	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.393	48	92	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.94E-7	50	93	No hit	No description
Pfam	PF00170	5.5E-7	50	91	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.7E-8	51	95	No hit	No description
PROSITE pattern	PS00036	0	53	68	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-34	132	207	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MADASSRTDT STVLDDNDKN QRMENGQIMA AAPSNSSDRS DRSDKPLDQK TLRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDI 120 EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFKVKGVA AKADVFHILS 180 GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LTNLQQSSQQ AEDALSQGME 240 ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL RQQTLHQMQR 300 ILTIRQASRA LLAIHDYFSR LRALSSLWLA RPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G438700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061586	0.0	BT061586.1 Zea mays full-length cDNA clone ZM_BFb0161M21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958749.1	0.0	transcription factor TGA2.1 isoform X2
Refseq	XP_022680182.1	0.0	transcription factor TGA2.1 isoform X2
Swissprot	Q7X993	0.0	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A368Q9D4	0.0	A0A368Q9D4_SETIT; Uncharacterized protein
STRING	Pavir.Bb03716.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-147	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Seita.2G438700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]