PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G436800.1.p

Common Name

LOC101759412, SETIT_029673mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 484aa MW: 51108 Da PI: 7.2924

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G436800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Seita.2G436800.1.p 102 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 162 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MELAGAASPR SPESHVAPPR PPPQPPEKDA CEDTGDMSMA VEKPCTRQEV DLGQTNRSSL 60 NSSSECENQA ASNDEMTGSE SNLETAKTEG DVSNGEKVLK KPDKILPCPR CNSMDTKFCY 120 YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSANCRSILI PGSSVATPAG 180 EAALFPLSIN GNQAAVNFGP DSPLCNSMAS VLKIGGEQSK NANPASTAQP RNGETQTCPA 240 STTASDGPRS ESHKGAVSAH QNGVVGHGNG VTSIHPIPFF PGPPFVYPWS PAWNGIPALA 300 APVCPAPAEA ANSSENGNSS CNAQWNVPPM VPVLPPGFCG PPFPVPVMPS SVWPFITPWP 360 NGAWSTPWLG PSSSVPASSP TSSSTCSDSS SPVLGKHSRD SRPQGDEKAE RCLWIPKTLR 420 IDDPDEAAKS SIWTTLGIEP GERGMFRPFQ SKPEGREQIS SSAKVLQANP AALSRSQSFQ 480 EKT*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MELAGAASPR SPESHVAPPR PPPQPPEKDA CEDTGDMSMA VEKPCTRQEV DLGQTNRSSL  60
NSSSECENQA ASNDEMTGSE SNLETAKTEG DVSNGEKVLK KPDKILPCPR CNSMDTKFCY  120
YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSANCRSILI PGSSVATPAG  180
EAALFPLSIN GNQAAVNFGP DSPLCNSMAS VLKIGGEQSK NANPASTAQP RNGETQTCPA  240
STTASDGPRS ESHKGAVSAH QNGVVGHGNG VTSIHPIPFF PGPPFVYPWS PAWNGIPALA  300
APVCPAPAEA ANSSENGNSS CNAQWNVPPM VPVLPPGFCG PPFPVPVMPS SVWPFITPWP  360
NGAWSTPWLG PSSSVPASSP TSSSTCSDSS SPVLGKHSRD SRPQGDEKAE RCLWIPKTLR  420
IDDPDEAAKS SIWTTLGIEP GERGMFRPFQ SKPEGREQIS SSAKVLQANP AALSRSQSFQ  480
EKT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G436800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958725.1	0.0	cyclic dof factor 3
TrEMBL	K3ZSU3	0.0	K3ZSU3_SETIT; Uncharacterized protein
STRING	Si029673m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-41	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Seita.2G436800.1.p
Entrez Gene	101759412