PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G407800.1.p | ||||||||
Common Name | LOC101761563, SETIT_033243mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 311aa MW: 34499.6 Da PI: 7.089 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.1e-35 | 29 | 121 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ Seita.2G407800.1.p 29 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKH 110 9****************************************************************999.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll +i+r+ks+ Seita.2G407800.1.p 111 LLAEIHRRKSS 121 ********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.1E-58 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-33 | 26 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-37 | 26 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.6E-31 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MAFLVERCGE MVVSMETSPT HAKPVPAPFL TKTYQLVDDP CTDHIVSWGE DDTTFVVWRP 60 PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVADRWEFA NEFFRKGAKH LLAEIHRRKS 120 SQPLPTPLPP HQPYHHHHHH LHHHHLNPFS PPPPPPTQPV YHFQEEPAAA HGVHGGSNGG 180 DGSGGGDFLA ALSEDNRQLR RRNSLLLSEL AHMKKLYNDI IYFLQNHVAP VTSPSSAAHH 240 ASLPSAGAAS SCRLMELDPG SPSPPPRPEA AEDAGDGTVK LFGVALQGKK KKRAHREDGD 300 DDHEQGSSEV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-21 | 25 | 121 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 1e-21 | 13 | 118 | 12 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 13 | 118 | 12 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 13 | 118 | 12 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G407800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054148 | 0.0 | BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958473.1 | 0.0 | heat stress transcription factor B-4b | ||||
Swissprot | Q7XHZ0 | 1e-130 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | K4A2Z1 | 0.0 | K4A2Z1_SETIT; Uncharacterized protein | ||||
STRING | Si033243m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 3e-64 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G407800.1.p |
Entrez Gene | 101761563 |
Publications ? help Back to Top | |||
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