PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G400400.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 286aa MW: 31732.8 Da PI: 6.5145

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G400400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.1	2.4e-06	33	82	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ ++erE+r Rd+ N+ f eL +l ++ + + Ka iL +++ +k+L Seita.2G400400.1.p 33 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRILKDL 82 678899**********************97....56788888888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.05E-11	29	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-10	29	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.23E-4	30	87	No hit	No description
PROSITE profile	PS50888	11.115	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-4	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MVPRDRAHGA AAAPTEKLVQ GPILNKCEKK APKKVHKSER EKRKRDKQND LFGELGNMLE 60 PDRQNNGKAC ILSDTTRILK DLLSQVESLR QENGALKNES RYVALERNEL LDENNMIRTE 120 ISELQNELRM HMEGNPIWSH DVTRSNRTVP HPATTVFALQ HLSHPAVTTT MAPPLQQLAV 180 LDQSYTAPAV STTMAPPLQQ LAVLDQSYTA PRRELQLFPE AASTEDTEPP QDQGISNHVM 240 RPQARYPTTM ATLPVHVYPI LPRMEDEQCS SGTTGSGEEG GVGNH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G400400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958406.1	0.0	transcription factor BHLH062
Refseq	XP_012698879.1	0.0	transcription factor BHLH062
Refseq	XP_012698880.1	0.0	transcription factor BHLH062
Swissprot	Q69V10	1e-115	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	A0A368Q7X6	0.0	A0A368Q7X6_SETIT; Uncharacterized protein
STRING	Pavir.Ba00364.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.2G400400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]