PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G371900.1.p | ||||||||
Common Name | LOC101776973, SETIT_029353mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HRT-like | ||||||||
Protein Properties | Length: 572aa MW: 62350.1 Da PI: 8.7311 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 55.5 | 9.3e-18 | 306 | 335 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C ++Pv+gRKRC HKG+R+ Seita.2G371900.1.p 306 CGVVLEDGSSCLEHPVEGRKRCSLHKGRRV 335 *****************************7 PP | |||||||
2 | HRT-like | 48.7 | 1.3e-15 | 533 | 562 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+ + dGs+C+++Pv+gRKRC+ HKG+R Seita.2G371900.1.p 533 ICGACTADGSPCMNKPVEGRKRCALHKGQR 562 8****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00465 | 7.3E-4 | 71 | 176 | IPR000305 | GIY-YIG nuclease superfamily |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MPAAVTARLK REDCPRTKHD SLFSPWKVLV GPSDWEDHSA GKEGVQRYRI RNLPDNFPGI 60 YELGVAGASD EGVRSRRRDS RGVVVVYLGQ ADSVRARLQQ YGRSGSHLDT GNSLGSAGKA 120 EVNALAAGPG LFREVFSRGY SVVFRCAQMD NKQEAEKTEA QLLRIFDYAW NKLQNGACRC 180 EEILLKLEQG ATSRRSSLLS RVCHSKQDIF GVKAGIKIKG SGSVNTPPGI MKSMLPRVRT 240 FVGFRPQPVN SEDSGGEAID IPWKKISGFP CGNRQAHRRR SGGHRIKKID VAKRRTVPIQ 300 DSNSFCGVVL EDGSSCLEHP VEGRKRCSLH KGRRVKGSPK SSSTSYPCQA EIPIPHLTED 360 LDNSDQTQEI IESIPHLTED LDSSDRTQES KILPQNISTT VEESPRQSNS IKEEEVKTRE 420 APTEDGKHDA SRDACICDCE EKASHAEPES QVPQPSGRMW FELLKARKKS TSADSSRGSG 480 SQTRDYAAPI CGAMADNGSC KVVPNAGRQI CEKDRGIEVA GASFSRSSGW PCICGACTAD 540 GSPCMNKPVE GRKRCALHKG QRGSCTPTPS V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G371900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958167.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | K3ZRX3 | 0.0 | K3ZRX3_SETIT; Uncharacterized protein | ||||
STRING | Si029353m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7948 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 5e-62 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G371900.1.p |
Entrez Gene | 101776973 |