PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G368500.1.p
Common NameSETIT_0289061mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 740aa    MW: 81713.6 Da    PI: 8.1135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G368500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-054769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cgk F r  nL+ H r H
  Seita.2G368500.1.p 47 FVCEVCGKGFQRDQNLQLHRRGH 69
                        89******************988 PP
2zf-C2H215.74.4e-05126147223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          Cp Cgk++  + +Lk H +t+
  Seita.2G368500.1.p 126 ACPRCGKRYAVQADLKAHAKTC 147
                         6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-84669No hitNo description
SMARTSM003550.0144769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6354769IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-54769IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM003558590120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5113146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-8120145No hitNo description
SMARTSM0035590125145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663125153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MAWPRAPKPR FRSEPGQAKQ KGRGSRSHPD AEVIALSPGT LLATNRFVCE VCGKGFQRDQ  60
NLQLHRRGHN LPWRLRQRGP GAAPPRRRVY VCPEPGCVHH SPARALGDLT GIKKHFCRKH  120
GEKRWACPRC GKRYAVQADL KAHAKTCGTR EYRCDCGTLF TRRDSFVTHR AFCGALVEET  180
GRVLAPPAPP SPRPPDLEAE ENVDKDKGQE EEETEDSAGA EVEQPKPVEA PAPEEPQRIP  240
SPPPLPQEPP RRPSPPPLPQ EPPRRPSPPP LPKEPPRRPS PPPLPKEPQL FPSPLRFPLE  300
QRPVVAVVPN VDEPEVVAET TVTAKLEDEA DTCFKEADQY KEAELEVSNL LDKDTPMLPC  360
FLPSPSEAIG TDGSSTTCGA GGSVSNSIAP STTTNTFAGL FASATTSTTS QSRSLRDLIG  420
VDPTFLCLAI GAPSSLFPQT SASNPGTFAP PPAPHMSATA LLQKAAEVGA SQSSSSFLKE  480
FGLASSSSSS PPSKQLPQGR FAENSMQPWH HRSNQQMERH RNHQQREMES SSQPWHHRSH  540
QQMEMERHRN RQQMEMESSS QPWHHRSTQQ MEMERHRNHQ QREMESSSQR WHHHRSDQQM  600
DMERHRSHQQ MEMESSTQRW PHNRSSQQME VMERHHRTSQ QMERESRAML SGGLGLGLAY  660
ESGNAGLPDL MMGPSPLFGP KPATLDFLGL GIGGTMGGST TNGGLPALMV GGELDVGSSA  720
QVPAPWEDAK RKTNGRTIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-29121183365Zinc finger protein JACKDAW
5b3h_F7e-29121183365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G368500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680094.10.0protein indeterminate-domain 1
TrEMBLA0A368Q6V30.0A0A368Q6V3_SETIT; Uncharacterized protein
STRINGSi028906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.24e-82C2H2 family protein