PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G364700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 33737.3 Da PI: 7.0191 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.2e-18 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aaka+++a++ l+g Seita.2G364700.1.p 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 99 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.04E-19 | 49 | 108 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-12 | 49 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.65E-16 | 49 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.4E-28 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-34 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.928 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MELHFQPQSS GFQLEDYSSY YYYYYQQEAA AQAKPSKPRG RKKGSNNHSK FVGVRQRPSG 60 RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGN EARTNFAPRI SPDCPLAVRI 120 RGLLHHKKVK KAKAAAASSS SAAAAAVSKK KAAISPAPTT SNSNSNSNSN NNSNSTNSAC 180 GGSSSSSSSS SSAVSCDDAV LNGGGGALDA SEVYRPEFAA VGAEEFDSWM FDSAFGQFPA 240 LDSFAAVDTA VPAAPVEEEP VATAAPGEMA EFERIKVERR ISASLYAMNG LQEYFDRVLD 300 ASACDPLWDL SPLCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 48 | 106 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G364700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040415 | 1e-163 | BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds. | |||
GenBank | JX469953 | 1e-163 | JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958111.1 | 0.0 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A368Q6N3 | 0.0 | A0A368Q6N3_SETIT; Uncharacterized protein | ||||
STRING | Si030686m | 1e-166 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-26 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G364700.1.p |