PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G355900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 505aa MW: 53423.2 Da PI: 9.4594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172 | 1.8e-53 | 119 | 247 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Seita.2G355900.1.p 119 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKASFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 208 79****************************.88***************8888999************************************ PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Seita.2G355900.1.p 209 ILAStgNREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 247 **99888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-63 | 116 | 284 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.943 | 119 | 284 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 120 | 247 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MPSAPPTPSF PARLRLRLWP ALLHRHGSIG LPTKPPKIPA QITRPPPPAQ LLPTDSVTNP 60 GYPRRCLLRS FTLEALPSCR DPSIHPAGDR PMRSMESTDS SSGSAPPQQQ KQTSSAPDLP 120 PGFRFHPTDE ELVVHYLKKK AASAPLPVAI IAEVDLYKFD PWELPDKASF GEHEWYFFSP 180 RDRKYPNGAR PNRAATSGYW KATGTDKPIL ASTGNREKVG VKKALVFYRG KPPKGLKTNW 240 IMHEYRLADA ASSAAANRPP PGAGGGKATS LRLDDWVLCR IYKKTTKLGA GDQQRSMECE 300 GSVEDAVMAA YPRHAAAAAM AAAAGGGGAH GGNYTSLLHH HEGHEDNFLD GLLTPEDAAG 360 LSAGATSLSH LAAAARAAPS ATKQLFVSSS TPFNWLDASA LAILPPTKRF HGYSGRDATD 420 GGMSLSSPSE RNQLGAVGAG AVDNDTGGGG ANAIPTFLTP LGVQAAATYH HHAILGTPVP 480 PEAAAAACSF QHPYQQLSGV NWNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-71 | 119 | 286 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-71 | 119 | 286 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-71 | 119 | 286 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-71 | 119 | 286 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-71 | 119 | 286 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 7e-71 | 119 | 286 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 7e-71 | 119 | 286 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G355900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680293.1 | 0.0 | NAC transcription factor NAM-B2 | ||||
Swissprot | A0SPJ9 | 0.0 | NAM2_HORVV; NAC transcription factor NAM-2 | ||||
TrEMBL | A0A368Q6E8 | 0.0 | A0A368Q6E8_SETIT; Uncharacterized protein | ||||
STRING | Si032676m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-86 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G355900.1.p |
Publications ? help Back to Top | |||
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