PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G353300.1.p
Common NameLOC101754811, SETIT_028829mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 963aa    MW: 105141 Da    PI: 8.4773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G353300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18459558198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Seita.2G353300.1.p 459 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQAEGLPLKVQDASGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID- 547
                         89**************************666778888***************9989999999***9.********************987. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  Seita.2G353300.1.p 548 PEGKLIMGFRK 558
                         77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-29455562IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19456558IPR015300DNA-binding pseudobarrel domain
CDDcd100173.58E-22457558No hitNo description
SMARTSM010195.4E-21459559IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265459560IPR003340B3 DNA binding domain
PfamPF023621.3E-15459558IPR003340B3 DNA binding domain
PROSITE profilePS5105013.939714764IPR011124Zinc finger, CW-type
PfamPF074963.5E-11719761IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MSAPAPQQAP PAQPPPPPPP PAAPAGVTAT PISVQPPPIQ PKPPPPPQQQ PQPAGPVSGP  60
PTPTPAQLLN LGPQPPLYRG PICWNSYCKD PDPNSFGRRG WKVRSGPPFS IYADLCGRCY  120
SQFEQGIYCE TFHSDEGGWR NCESCGRRVH CGCIVSIHKY QLRDAGGVDC AKCARNTRTA  180
MAPPSPVWAS PMHNSQNVAD RKDIPVKSWR PPAGQISSQW RQTNLWSVSS IQSDLQQRLA  240
FEFDRPSGSE KLLPGRTFIH AQERKFDDMH DRPTTPAGMN HIIRERDANG HGQPTNMDPA  300
YPYNLYHRDG PHPNNLHDPS HHGGENDSLS SRKVALPDAS TGVDGFKHDS HHPSILKDDP  360
PSLSVGLASN FASQNGPKDH IRIAPAQQQA QMASSSLQKQ FYSHPVTGYS EFQAQLRNGR  420
PRMDAKARSQ LLPRYWPRIT DQELQHLSND SNSVITPLFE KMLSASDAGR IGRLVLPKKC  480
AEAYFPPISQ AEGLPLKVQD ASGKEWIFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT  540
VTFSRIDPEG KLIMGFRKAT NMSSEQEQTT KPANGAPATS EANGKVSAPD SSPNAAISRQ  600
NKVNTETKSS SPVEQAATSK IDKDVSAPKE GPGTASSSPG PVKRKATNLT PKNKRLRMEN  660
EESMELKITW EEAQELLRPP PKAPSIVIVD GHEFEEYEEP PILGRKTYFA TDQSGSNHQW  720
AQCENCSKWR KLPADALMPS KWTCNDNKWD SERSSCEAAQ EISMEELAEL IPIKSGPGGA  780
KKPKSKIEGE AIDASDGLDT LANLAILGEG EALPSQPTTK HPRHRPGCSC IVCIQPPSGK  840
GPKHKQTCTC NVCMTVRRRF RTLMLRREKR ATTDSPRRKE TGQSSQTVTQ AGSGLQATSA  900
NATNSSKKAV GNADGPEDMA VDHKVTSSPV KNHIDLNSQP ERDDEQSPKS GAAGALSRDN  960
PT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-644375662131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G353300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548470.0BT054847.1 Zea mays full-length cDNA clone ZM_BFb0181D20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699489.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLK3ZQF20.0K3ZQF2_SETIT; Uncharacterized protein
STRINGSi028829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-140HSI2-like 1