PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G349800.1.p

Common Name

LOC101774803, SETIT_030166mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 382aa MW: 40738.7 Da PI: 7.2205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G349800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.7e-13	311	356	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Seita.2G349800.1.p 311 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 356 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	305	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-16	308	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.37E-13	309	360	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-16	310	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-13	311	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-10	311	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP STVLGELCED FLPPGPRAAS PDAGADNVFA 60 RFLADHHIRD DKPSPPPPPP APHFPGEAGM ASQQQQMMFQ SQHQQQQEMV DAKSGLYRTV 120 SSGMEPASAA AAGVGASNLA RQSSSPAGFL DNLNMDNGYG AMLRAGMSMG FRDGSSAAAA 180 TADSLAGGGS RLKGQLSFSS RQGSLMSQIS EMDSEEVGGS SPEAAGGGRG YIPGYPMGSG 240 WEDSSSLMSE NLSGMKRPRD SLEPGQNGLM HQFSLPKTSS EMANIEKFLQ FQDAVPCKIR 300 AKRGCATHPR SIAERVRRTK ISERIRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQKQVK 360 VLKESHANCT CSASKNQQHS D*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP STVLGELCED FLPPGPRAAS PDAGADNVFA  60
RFLADHHIRD DKPSPPPPPP APHFPGEAGM ASQQQQMMFQ SQHQQQQEMV DAKSGLYRTV  120
SSGMEPASAA AAGVGASNLA RQSSSPAGFL DNLNMDNGYG AMLRAGMSMG FRDGSSAAAA  180
TADSLAGGGS RLKGQLSFSS RQGSLMSQIS EMDSEEVGGS SPEAAGGGRG YIPGYPMGSG  240
WEDSSSLMSE NLSGMKRPRD SLEPGQNGLM HQFSLPKTSS EMANIEKFLQ FQDAVPCKIR  300
AKRGCATHPR SIAERVRRTK ISERIRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQKQVK  360
VLKESHANCT CSASKNQQHS D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G349800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957993.1	0.0	transcription factor bHLH130
Refseq	XP_022680313.1	0.0	transcription factor bHLH130
TrEMBL	K3ZU85	0.0	K3ZU85_SETIT; Uncharacterized protein
STRING	Si030166m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.2G349800.1.p
Entrez Gene	101774803