PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G346000.1.p | ||||||||
Common Name | SETIT_032717mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 23948.4 Da PI: 9.357 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 48 | 93 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +ErrRR r+Ns + Lr ++P+ +K+sK ++L A+++Ik+Lq Seita.2G346000.1.p 48 NLVAERRRRGRLNSNILALRAIVPNI-----TKMSKESTLSDAIDHIKKLQ 93 5579*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.84E-12 | 43 | 96 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-17 | 43 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.034 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-14 | 45 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 48 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-13 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048656 | Biological Process | anther wall tapetum formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MPRRQRARSS EELKAEDFVD SVLNFKKGGR GKLPGDAQPA ATEYKSKNLV AERRRRGRLN 60 SNILALRAIV PNITKMSKES TLSDAIDHIK KLQNQVLELQ RQLADSPGEA WEKQGSASCS 120 ESFAATENMP HQGQVELVPL GPYKYHLKIF CKKAGTFTKV LEALCSYNVQ VTSLSTITFY 180 GYAESVFSIE VKGEQDVVML ELRSLLSSIV EVPNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G346000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068494 | 1e-180 | BT068494.1 Zea mays full-length cDNA clone ZM_BFb0227D06 mRNA, complete cds. | |||
GenBank | KJ726791 | 1e-180 | KJ726791.1 Zea mays clone pUT2277 bHLH transcription factor (bHLH66) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680326.1 | 1e-147 | LOW QUALITY PROTEIN: transcription factor UDT1-like | ||||
Swissprot | B9FXT3 | 1e-91 | UDT1_ORYSJ; Transcription factor UDT1 | ||||
TrEMBL | A0A368Q674 | 1e-158 | A0A368Q674_SETIT; Uncharacterized protein | ||||
STRING | Si032717m | 1e-147 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11982 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 7e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G346000.1.p |
Publications ? help Back to Top | |||
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