PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G342600.1.p | ||||||||
Common Name | LOC101753183, SETIT_030877mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27580.6 Da PI: 6.5345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.2e-10 | 93 | 138 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 ++ rE+ RRd++N++f eL +l + + +K++K++iL A++ + Seita.2G342600.1.p 93 TKACREKIRRDKLNERFLELGAILEPG---KTPKMDKSAILNDAIRAVG 138 7789**********************9...9**************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-13 | 80 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.398 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.45E-8 | 92 | 145 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-13 | 92 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-8 | 93 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-9 | 95 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00122 | 155 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MASPEGTTWV FDCPLMDDLA VAADFAAAPA GGFFWSAAPP MQPLAVQAPM QAVAAAPAPN 60 PCVEISGSVD CDQGKEQPTN KRPRSESTAQ PSTKACREKI RRDKLNERFL ELGAILEPGK 120 TPKMDKSAIL NDAIRAVGEL RSEAQKLKDS NESLQEKIKE LKAEKNELRD EKQRLKAEKE 180 SLEQQIKFLN SRPSLVPHPP VIPASAFTTP KGPPAAGHKL MMPVIGYPGF PMWQFMPPSD 240 VDTSNDPKSC PPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G342600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957936.1 | 0.0 | transcription factor ILR3 isoform X2 | ||||
Swissprot | Q9FH37 | 4e-75 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | K3ZW98 | 0.0 | K3ZW98_SETIT; Uncharacterized protein | ||||
STRING | Si030877m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G342600.1.p |
Entrez Gene | 101753183 |