PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G330400.6.p

Common Name

LOC101783582

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 780aa MW: 88837.5 Da PI: 6.6241

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G330400.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.2e-22	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la Seita.2G330400.6.p 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140 7******************9***************99988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-20	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-25	262	339	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	539	575	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-6	543	572	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-6	550	577	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MDSSQDSQEE RHQRRENGEE TEKAADYGSA LSRKEATEEL LGCIVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAFGKSG VIDPSASTES HPINGFSDTI 180 EGDTADNSGY TIRECYNQVG MQGITVIEAG DGQSLVSYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFYRDGK CRNDYGCFGD AIIFDTTYRT NKYNLICAPF VGVDHHWQNV VFGCAFLLDE 300 SVASYVWLFK SFLESMGGKS PKSIFTDQDE AIMQAVEQVS LTHTLLFLLA YSEECTISFS 360 SLNTSQAFQH LFMQGSDSEE DFEESWTAML REYKLQDNSW LNDLHRFRHK WCSALNKDTF 420 DGGINSSQWG EVSNNILSGI SDENTSLTRF ALLLEKVVKD LRRNESEEDF RCSQTAPVRA 480 VKHSTVLKQA AESYTHRIYK LFEAEFLDGC GATSCHETSS GGNLLRFEIT MQGRGSKVWA 540 VALDTSTMEI TCGCRKFERM GLLCSHALKV FTLQNVDTIP EKYVLKRWTK DARRSMFKLA 600 QDDSTQQECT EAELAYRNRA MQYAYNLIMK SQELEESRKI FWDSLETGEK ALEVFFEMRN 660 MRTQAAKDAS NREKKKKKPS KGPNSKKAKQ APAASSAGLE LIVQTNEHQY QPSQDAQGNA 720 TIGRPYYYQQ AFPTAPIQPN QMYMHPNVHT MPLCTSQQDH LPAYAAIRPN SNFGGAKNI*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MDSSQDSQEE RHQRRENGEE TEKAADYGSA LSRKEATEEL LGCIVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAFGKSG VIDPSASTES HPINGFSDTI  180
EGDTADNSGY TIRECYNQVG MQGITVIEAG DGQSLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK CRNDYGCFGD AIIFDTTYRT NKYNLICAPF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWLFK SFLESMGGKS PKSIFTDQDE AIMQAVEQVS LTHTLLFLLA YSEECTISFS  360
SLNTSQAFQH LFMQGSDSEE DFEESWTAML REYKLQDNSW LNDLHRFRHK WCSALNKDTF  420
DGGINSSQWG EVSNNILSGI SDENTSLTRF ALLLEKVVKD LRRNESEEDF RCSQTAPVRA  480
VKHSTVLKQA AESYTHRIYK LFEAEFLDGC GATSCHETSS GGNLLRFEIT MQGRGSKVWA  540
VALDTSTMEI TCGCRKFERM GLLCSHALKV FTLQNVDTIP EKYVLKRWTK DARRSMFKLA  600
QDDSTQQECT EAELAYRNRA MQYAYNLIMK SQELEESRKI FWDSLETGEK ALEVFFEMRN  660
MRTQAAKDAS NREKKKKKPS KGPNSKKAKQ APAASSAGLE LIVQTNEHQY QPSQDAQGNA  720
TIGRPYYYQQ AFPTAPIQPN QMYMHPNVHT MPLCTSQQDH LPAYAAIRPN SNFGGAKNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G330400.6.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699533.1	0.0	protein FAR1-RELATED SEQUENCE 9 isoform X1
Refseq	XP_014660260.1	0.0	protein FAR1-RELATED SEQUENCE 9 isoform X1
TrEMBL	A0A368Q6A7	0.0	A0A368Q6A7_SETIT; Uncharacterized protein
STRING	Si029002m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-88	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.2G330400.6.p
Entrez Gene	101783582