PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G325000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 214aa    MW: 22466.9 Da    PI: 11.0498
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G325000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.97.9e-40109185278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cqve+C+adl +a++y+rrhkvCe+hska vvl++gl+qrfCqqCsrfhel efD++k+sCrrrLa+hnerrrk++a
  Seita.2G325000.1.p 109 CQVERCAADLHDARRYYRRHKVCETHSKALVVLIAGLRQRFCQQCSRFHELLEFDDNKHSCRRRLAGHNERRRKSSA 185
                         **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-32104170IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.718106183IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-37107187IPR004333Transcription factor, SBP-box
PfamPF031102.2E-31109182IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRAKQASKRS SRAPPRQLSD GSSITSSLAG ASMDRKSSSS PAAASMAALA AAAAAGQSSS  60
GHGQANGALS PKREEEDKKP AMLAAVGGAS SSSPPVATRT VAASGGPSCQ VERCAADLHD  120
ARRYYRRHKV CETHSKALVV LIAGLRQRFC QQCSRFHELL EFDDNKHSCR RRLAGHNERR  180
RKSSADRHGG GGGDQNGRSH PAGNPSRDHF QIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-34103182584squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G325000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916722e-77FP091672.1 Phyllostachys edulis cDNA clone: bphylf033o15, full insert sequence.
GenBankFP0944782e-77FP094478.1 Phyllostachys edulis cDNA clone: bphyst005i03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698913.21e-151squamosa promoter-binding protein 1
TrEMBLA0A368Q6381e-150A0A368Q638_SETIT; Uncharacterized protein
STRINGSi032170m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.17e-37squamosa promoter binding protein-like 5