PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G318600.1.p
Common NameLOC101774253, SETIT_028862mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 914aa    MW: 102557 Da    PI: 8.8455
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G318600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.71.6e-51331474117
                CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                         e  +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+
  Seita.2G318600.1.p  33 EaGTRWFRPNEIYAVLANHARFKVHAQPIDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPN 123
                         4379*************************************************************************************** PP

                CG-1  94 fqrrcywlLeeelekivlvhylev 117
                         f rrcywlL++ele+ivlvhy+++
  Seita.2G318600.1.p 124 FFRRCYWLLDKELERIVLVHYRQT 147
                         *********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.03127153IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-6230148IPR005559CG-1 DNA-binding domain
PfamPF038592.8E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.42E-10380466IPR014756Immunoglobulin E-set
SuperFamilySSF484035.29E-18519669IPR020683Ankyrin repeat-containing domain
CDDcd002042.25E-16557665No hitNo description
Gene3DG3DSA:1.25.40.201.2E-18564697IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.51573677IPR020683Ankyrin repeat-containing domain
PfamPF127964.8E-8579669IPR020683Ankyrin repeat-containing domain
SMARTSM002486.3E-6606635IPR002110Ankyrin repeat
PROSITE profilePS5008811.808606638IPR002110Ankyrin repeat
SMARTSM00248520645674IPR002110Ankyrin repeat
SuperFamilySSF525406.9E-11719822IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.705756782IPR000048IQ motif, EF-hand binding site
SMARTSM000150.55771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.986772801IPR000048IQ motif, EF-hand binding site
PfamPF006120.0046774792IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019794816IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.53795819IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-4796816IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249877905IPR000048IQ motif, EF-hand binding site
PfamPF006120.12878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MAGGAGARDP LVASEIHGFL TCADLNFDKL MAEAGTRWFR PNEIYAVLAN HARFKVHAQP  60
IDKPASGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGED  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPQPHIEA EVAEVPPINI IHYTSPLTST  180
DSVSARTELS SCAAAAAPEE INSHGGRAIS CETDDHDSSL ESFWADLLES SMKNDTSVRG  240
GSLTPNQQTN YGMMDSGNNI FNTNATSNAI FPSPANVVSE AYATNPGLNQ ISESYYGALK  300
HQANQSPSLL TSDLDSQSKP LANSLMRTPV DGNMPSYAPT RQNSLGLWKY LDDDITSLGD  360
NPSSAIPTTR PVNDEIPFHI IEISSEWAYC TEDTKVLVVG YFHENYKHLA GTNLYCVIGD  420
QCVNTDIVQT GVYRFMARPH VPGRVNLYLT LDGKTPISKV LSFDYREIPG SSDDDEPKKS  480
KLQMQMRLAR LLFSTSKKKI APKFLAEGSR VSNLLSASTE KEWMDMFKYV TDSKGTNIPA  540
TEGLLELVLR NRLQEWLVEK IIEGQKSTDR DDLGRGPIHL CSFLGYTWAI RLFSLSGFSL  600
DFRDSSGWTA LHWAAYYGRE KMVAALLSAG ANPSLVTDPT HDDPGGHTAA DLAARQGFDG  660
LAAYLAEKGL TAHFEAMSLS KDKRSTSRTQ SIKQHSKEVE NLSEQELCLR ESLAAYRNAA  720
DAASNIQAAL RERTLKLQTK AIQLANPEIE AATIVAAMRI QHAFRNYNRK KEMRAAARIQ  780
SHFRTWQMRR NFINMRRQAI KIQAAYRGHQ VRRQYRKVIW SVGVVEKAIL RWRKKRKGLR  840
GIATGMPVAM ATDAEAASTA EEDYYQVGRQ QAEDRFNRSV VRVQALFRSH RAQQEYRRMK  900
VAHEEAKVEF SQK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G318600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0879100.0BT087910.1 Zea mays full-length cDNA clone ZM_BFb0305J11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957727.10.0calmodulin-binding transcription activator 6
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLK3ZQI20.0K3ZQI2_SETIT; Uncharacterized protein
STRINGSi028862m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators