PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G286400.1.p
Common NameLOC101769017, SETIT_030750mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 279aa    MW: 30378.9 Da    PI: 5.3909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G286400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
  Seita.2G286400.1.p 14 RGPWTAEEDRKLINFILSNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding50.83.9e-1670111447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          T  E++  +d++++lG++ W++Ia++++ gRt++++k++w+++
  Seita.2G286400.1.p  70 LTDAEEQVVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                         5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-21562IPR009057Homeodomain-like
PROSITE profilePS5129413.458961IPR017930Myb domain
SuperFamilySSF466892.45E-2611108IPR009057Homeodomain-like
SMARTSM007174.5E-121363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
CDDcd001671.46E-91661No hitNo description
PROSITE profilePS5129427.53662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2563117IPR009057Homeodomain-like
SMARTSM007172.5E-1466114IPR001005SANT/Myb domain
PfamPF002498.3E-1470111IPR001005SANT/Myb domain
CDDcd001671.45E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTAE EDRKLINFIL SNGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL TDAEEQVVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLD RKTSSPATTS HSVVTADSTS KSDEATKQQS PASDVVRDVL AADGFSPTES  180
STNTVSTGGS SSSSGGSHDQ DPLVKWLLEE DPPTGDEPWL DFTAGSVDVD EFSSIAAGPE  240
LPWDGATDWL LDYQDFGLED SSLVVDGYMI NGSNGAKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G286400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957458.10.0protein ODORANT1
SwissprotQ50EX61e-95ODO1_PETHY; Protein ODORANT1
TrEMBLK3ZVW90.0K3ZVW9_SETIT; Uncharacterized protein
STRINGSi030750m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.13e-88myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]