PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G284200.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 211aa    MW: 22895.5 Da    PI: 5.9217
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G284200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07333434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ +e+ ++ lfC  ++  lC+ C ++ H
  Seita.2G284200.2.p  3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33
                        68**************************998 PP
2zf-B_box22.91.8e-075291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        +  +C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  Seita.2G284200.2.p 52 KLARCDICESFPAFFHCEIDGTSLCLSCDMTVHVGgkrtH 91
                        6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000212.47E-8345No hitNo description
PfamPF006435.4E-6341IPR000315B-box-type zinc finger
SMARTSM003363.4E-75196IPR000315B-box-type zinc finger
CDDcd000211.19E-55584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLANS NKLARCDICE  60
SFPAFFHCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQS VEFPGDKLGH MDDVAMQSKD  120
PETQIDQKPP HSVTKEQMAN HHNGSDDPAS DGNCEDQGNI NSKMIDLNMR PVRTNGQGSN  180
SQTQGVDHSV NNHDSPGVVP TSNYEGDANK *
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G284200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409280.0BT040928.1 Zea mays full-length cDNA clone ZM_BFc0153E05 mRNA, complete cds.
GenBankEU9558390.0EU955839.1 Zea mays clone 1548279 salt tolerance-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957436.11e-157B-box zinc finger protein 19 isoform X2
SwissprotC0SVM51e-68BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A368Q3N71e-155A0A368Q3N7_SETIT; Uncharacterized protein
STRINGPavir.Ba01246.1.p1e-137(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-71DBB family protein