PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G284000.1.p
Common NameLOC101759400, SETIT_030983mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26082.9 Da    PI: 5.0748
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G284000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-193084256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++ +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Seita.2G284000.1.p 30 KNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 84
                        67789*************************************************9 PP
2HD-ZIP_I/II121.93.2e-3931122293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal  + e+L+ke+++L ++l+
  Seita.2G284000.1.p  31 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQLE 121
                         79*************************************************************************************9998 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Seita.2G284000.1.p 122 K 122
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-191888IPR009057Homeodomain-like
PROSITE profilePS5007117.2652686IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-202886IPR009057Homeodomain-like
SMARTSM003891.9E-162990IPR001356Homeobox domain
PfamPF000465.0E-173084IPR001356Homeobox domain
CDDcd000864.37E-173087No hitNo description
PRINTSPR000317.7E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000317.7E-66682IPR000047Helix-turn-helix motif
PfamPF021833.7E-1386128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEGEDDGPEW MMEVGGGGGK GGKGGGGLDK NKKRFSEEQI KSLESMFATQ TKLEPRQKLQ  60
LARELGLQPR QVAIWFQNKR ARWKSKQLER EYSALRDDYD ALLCSYESLK KEKHALLKQL  120
EKLAEMMQEP RGKYGGNAGA VAGEDVRSGV GGMKEEFADA GAGLYSSDGA DGGKFAHFTD  180
DDAGALFRPS PQQPAAGFTS SGPPEHQPFQ FHSSCWPSST EQTCSSSQWW EFESLSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026GGKGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G284000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0872580.0BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957433.11e-173homeobox-leucine zipper protein HOX6
SwissprotQ651Z56e-98HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH356e-98HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLK3ZWK11e-172K3ZWK1_SETIT; Uncharacterized protein
STRINGSi030983m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-44homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]