PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G282400.1.p | ||||||||
Common Name | SETIT_030094mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 402aa MW: 42215.9 Da PI: 4.9352 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.1e-35 | 41 | 132 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+ Seita.2G282400.1.p 41 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 122 9*****************************************************************99.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k Seita.2G282400.1.p 123 LLCDIHRRKV 132 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-38 | 32 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.6E-59 | 37 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.7E-35 | 38 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.2E-32 | 41 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-20 | 41 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-20 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 80 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-20 | 92 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAEQGGATGE AGGSEPPATA PAPAPPPVAE AAGQRSLPTP FLTKTYQLVD DPAVDDVISW 60 NEDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANDCFRRGE 120 KRLLCDIHRR KVAPAAPAAA LATAAAAAAS GAVTVAAAPI PMALPVTLPG SPALSSDEQV 180 LSSNSGSAED HPQAVPSGSG GASASGDTGE ENERLRRENA RLTRELGQMK KLCNNILLLM 240 TKYASSQQLD ASAALSSVVN CSGESSEALP PPPPLPPAIL DLMPSCPSLA TAAAGLVADA 300 DPEQAARLFG VSIGLKRTRE DDDTGEEPAD HGSAGAEVKT EASDPHQHRG SSSKEPSPDQ 360 HPWPIYRPTP VYHSMRCNAP DQGAAGSDQD GSNSRLYRLL Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 4e-26 | 41 | 130 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 4e-26 | 41 | 130 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 4e-26 | 41 | 130 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 4e-26 | 41 | 130 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 4e-26 | 41 | 130 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G282400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098629 | 0.0 | FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957414.1 | 0.0 | heat stress transcription factor B-2c isoform X2 | ||||
Swissprot | Q652B0 | 1e-157 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
TrEMBL | A0A368Q422 | 0.0 | A0A368Q422_SETIT; Uncharacterized protein | ||||
STRING | Si030094m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 2e-59 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G282400.1.p |
Publications ? help Back to Top | |||
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