PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G282200.1.p
Common NameLOC101786258, SETIT_028908mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 861aa    MW: 91158 Da    PI: 6.6151
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G282200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-21123178156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  Seita.2G282200.1.p 123 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 178
                         688999***********************************************999 PP
2START1701.6e-533395724205
                         HHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   4 eeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         ++a++el+k a+ eep+W  s+     e +n+de+ + f++  +     + +ea r+ gv +  +++lv +l+d + +W+e+++    +a+
  Seita.2G282200.1.p 339 LAAMEELMKVAQMEEPLWLPSPdggglETLNYDEYHRAFARVFGpspagFVSEATREAGVAITSSVDLVDSLMDAA-RWSEMFPcivaRAS 428
                         789************************************775559*******************************.************** PP

                         EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.............-TTSEE-EESSEEE CS
               START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe............sssvvRaellpSgi 152
                         t++ issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd    p               ++++ ++llp+g+
  Seita.2G282200.1.p 429 TTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDGgnnphhhaqnggAAGYMGCRLLPTGC 519
                         *********************************************************97654432222223444466889*********** PP

                         EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         +++++ ng+skvtwv h+++++  +h+l+r+l++sg+a ga++w+a lqrqc+
  Seita.2G282200.1.p 520 IVQDMNNGYSKVTWVVHAEYDETAVHQLYRQLLRSGQALGARRWLASLQRQCQ 572
                         ****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-22105180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-23110180IPR009057Homeodomain-like
PROSITE profilePS5007118.301120180IPR001356Homeobox domain
SMARTSM003898.7E-20121184IPR001356Homeobox domain
CDDcd000866.70E-20123180No hitNo description
PfamPF000464.0E-19123178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PROSITE profilePS5084840.212327576IPR002913START domain
SuperFamilySSF559614.95E-27331572No hitNo description
CDDcd088752.72E-103333572No hitNo description
SMARTSM002343.1E-40336573IPR002913START domain
PfamPF018524.0E-45339572IPR002913START domain
SuperFamilySSF559611.88E-14646850No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MSFGGMFDGA GSGVFSYDGA GGGGGAGMHN PGRLIAAPPI PKPGGFGAPG LSLGLQTNMD  60
GGQLGDMGRM GMMGGGGSGS AGEGDSMGRG REDENDSRSG SDNVDGASGD ELDPDNSNPR  120
KKKKRYHRHT PQQIQELEAV FKECPHPDEK QRMELSKRLN LESRQVKFWF QNRRTQMKTQ  180
IERHENALLR QENDKLRAEN MTIREAMRNP ICANCGGAAL LGEVSLEEQH LRIENARLKD  240
ELDRVCALAG KFLGRPISSG GPIPSLQGCS GLELGVGTNG FGLGPLGATS ALHPLPDLMS  300
GGPVGSAGMR LPAGIGGLDG GMHGAAHGVD RTVLLELGLA AMEELMKVAQ MEEPLWLPSP  360
DGGGLETLNY DEYHRAFARV FGPSPAGFVS EATREAGVAI TSSVDLVDSL MDAARWSEMF  420
PCIVARASTT DIISSGMGGT RSGSIQLMHA ELQVLSPLVP IREVVFLRFC KQHAEGLWAV  480
VDVSVDAVLR PDGGNNPHHH AQNGGAAGYM GCRLLPTGCI VQDMNNGYSK VTWVVHAEYD  540
ETAVHQLYRQ LLRSGQALGA RRWLASLQRQ CQYLAILCSN SLPARDHAAI TPVGRRSMLK  600
LAQRMTDNFC AGVCASAAQK WRRLDEWRGE GGGAAGNGAA GEGEKKVRMM ARQSVGAPGE  660
PPGVVLSATT SVRLPSTPPQ RVFDYLRDEQ RRGEWDILAN GEAMQEMGHI AKGQHHGNAV  720
SLLRPNATSG NQNNMLILQE TCTDSSGSLV VYAPVDVQSM HVVMNGGDSA YVSLLPSGFA  780
ILPDGHSQPS SNTAQGSPNS QSSTVGSNSA GSLVTVAFQI LVNNLPTAKL TVESVETVSN  840
LLSCTIQKIK SALQASIVTP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G282200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509850.0AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957413.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLK3ZQM80.0K3ZQM8_SETIT; Uncharacterized protein
STRINGSi028908m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein