PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G280900.1.p | ||||||||
Common Name | LOC101770107, SETIT_032213mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 23558.3 Da PI: 10.1283 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 24 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d +r r +lg+f+taeeAa+a+++a+++l+ge Seita.2G280900.1.p 24 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 74 589******.7*********....4456**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-27 | 24 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-15 | 24 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-33 | 24 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.415 | 24 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.17E-26 | 24 | 81 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-20 | 25 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAAQQESGSR AATATAATAC RGRRFVGVRQ RPSGRWVAEI KDSAQRVRLW LGTFDTAEEA 60 ARAYDEAARA LRGESTRTNF AGRARHCGGA ARARLSKNLQ HVMARAAAAG RATACAGVGE 120 QFALAAVFRR CQQPAAAAPA PPQTPQQAEA VHAAKHAVQP SFVVPRRNEA PPSSALGAGD 180 LWGGAAAAEV LCAEERSFNV SSSVTVPPSF SASSSESLDV EDFLAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-15 | 24 | 80 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G280900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660200.1 | 1e-158 | dehydration-responsive element-binding protein 2E | ||||
TrEMBL | K4A027 | 1e-156 | K4A027_SETIT; Uncharacterized protein | ||||
STRING | Si032213m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G280900.1.p |
Entrez Gene | 101770107 |