PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G269600.1.p
Common NameLOC101781817, SETIT_030810mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 269aa    MW: 27880.2 Da    PI: 9.8628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G269600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20122171255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     + +r++lg++ t+eeAa+a++aa+++++g
  Seita.2G269600.1.p 122 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTYATPEEAARAYDAAARRFKG 171
                         69*******.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.33E-18121181No hitNo description
SuperFamilySSF541717.19E-22122180IPR016177DNA-binding domain
PROSITE profilePS5103224.908122179IPR001471AP2/ERF domain
PfamPF008478.4E-14122171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-31122180IPR001471AP2/ERF domain
SMARTSM003804.5E-35122185IPR001471AP2/ERF domain
PRINTSPR003675.1E-11123134IPR001471AP2/ERF domain
PRINTSPR003675.1E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGVGVVVTGE EVDERRAWFI QVQAGAARPG GMHGDRGLVA PWWGEEEQEE RVAAVGGGFV  60
GHCYSAARAE YDAAAVAAAL TYVVCATEPP PPTTRGGGVA ASALPPAPWQ GRRHGGGGAQ  120
QHYRGVRRRP WGKWAAEIRD PAKAARVWLG TYATPEEAAR AYDAAARRFK GAKAKLNFPA  180
TAAPSQRPQQ QATAAHLPII SPSPPSSPTF AAAATVVEFP GLWQYAHILQ SSDAGHVRAV  240
ASGLPPPPPV GSGHGRDGIG GGSVGDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21121179463ATERF1
3gcc_A4e-21121179463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G269600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957315.10.0ethylene-responsive transcription factor 4
TrEMBLK3ZW290.0K3ZW29_SETIT; Uncharacterized protein
STRINGSi030810m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-13related to AP2 6l