PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G266500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 451aa    MW: 46766.2 Da    PI: 7.4165
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G266500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.14e-41114190278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC+adls++++yhrrhkvCe+hsk+pvv+vsg+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
  Seita.2G266500.1.p 114 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVSGREMRFCQQCSRFHLLAEFDDAKRSCRKRLDGHNRRRRKPQP 190
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-36106175IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206111188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-38112193IPR004333Transcription factor, SBP-box
PfamPF031103.3E-31114187IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDWDLKMPVS WDLAELEHDA VPAIAAAAAP PAAAASGIAT VAAAAASARG APSRAECSVD  60
LKLGGLGEFG AADRMKEPAA PVSAAAAAVV PSASPMKRPR SGAGGAGGAQ CPSCAVDGCK  120
ADLSKCRDYH RRHKVCEAHS KTPVVVVSGR EMRFCQQCSR FHLLAEFDDA KRSCRKRLDG  180
HNRRRRKPQP DTMNSGSFMT SQQGLFSSAG TRFSSFPAPR PEASWSGVIK SEDSSYYTHH  240
QVLSARPHFA GSAAAAYSKE GRRFPFLQDG DQVSFGAGAA AAALEASTAC QPLLKTVAPP  300
PPPPESSSSN KIFSDGLTPV LDSDCALSLL SSPANSSSVD VSRMVQPTEH IPVAQPLVPN  360
LHQHQQQHHH HQFGGSPGWF ACSQAGSSGV TAAAGAGGFA ACPGGVEGEP LNTILVPSSD  420
GHEMNYHGIF HVGGEGSSDG TSPSLPFSWQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27104187184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170187KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G266500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538750.0BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957286.10.0squamosa promoter-binding-like protein 18 isoform X1
SwissprotQ0J0K11e-161SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A368Q2Y60.0A0A368Q2Y6_SETIT; Uncharacterized protein
STRINGSb02g029300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-42SBP family protein