PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G263000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 470aa MW: 49200.3 Da PI: 8.7934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G263000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	285	332	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Seita.2G263000.1.p 285 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 332 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.08E-10	279	336	No hit	No description
SuperFamily	SSF47459	1.13E-16	279	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	281	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.123	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-6	285	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-9	287	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MLKVGGVPPA TAAAVEPGGN PPPQASHRAA RRDGRGVPAQ PNRSGSSQPA SNHRSIKSIP 60 APTGSKALSL CFAFPQIRRG LESEEKRRPG TTSRHPRFAS CAILGGVPRL SSFSFFPMDS 120 DYVASLLMGH SAAPGLDFTA ALDGGFLDAL CGGGGGAGLF GLPGVAAGAG GGGSPEGSSV 180 SDPAWARARD GGNARKRKTP PAGATSGKEA CLGKAGEAKG PDGKKCRVGA GGSPVKPKVE 240 EATASDGSVE DKGQKKGKGK SSKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR 300 MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK 360 DMYQSCGPSV NSVFPLESAG AAFPFCEQAD LFQSFGSGAM EDQCSLSLLD TALPHTTNQT 420 FAFQKQQRDF WEDGLPNTLP IVSEQSQENG VSAPDFDGQL QADQTKIEF*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MLKVGGVPPA TAAAVEPGGN PPPQASHRAA RRDGRGVPAQ PNRSGSSQPA SNHRSIKSIP  60
APTGSKALSL CFAFPQIRRG LESEEKRRPG TTSRHPRFAS CAILGGVPRL SSFSFFPMDS  120
DYVASLLMGH SAAPGLDFTA ALDGGFLDAL CGGGGGAGLF GLPGVAAGAG GGGSPEGSSV  180
SDPAWARARD GGNARKRKTP PAGATSGKEA CLGKAGEAKG PDGKKCRVGA GGSPVKPKVE  240
EATASDGSVE DKGQKKGKGK SSKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR  300
MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK  360
DMYQSCGPSV NSVFPLESAG AAFPFCEQAD LFQSFGSGAM EDQCSLSLLD TALPHTTNQT  420
FAFQKQQRDF WEDGLPNTLP IVSEQSQENG VSAPDFDGQL QADQTKIEF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G263000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957264.1	0.0	transcription factor BHLH089
TrEMBL	A0A368Q2U4	0.0	A0A368Q2U4_SETIT; Uncharacterized protein
STRING	Si030324m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.2G263000.1.p