PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G258300.1.p
Common NameLOC101780745, SETIT_029088mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 706aa    MW: 77200.9 Da    PI: 4.5248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G258300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.28.6e-46101352128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrF+Ptdeelv ++Lk+++ + + +    +++vd+yk++P++Lp+  ++++++++w+fFs++d+ky++g+r++r+t +gyWkatgkd+
  Seita.2G258300.1.p  10 PPGFRFSPTDEELVLYFLKRRIVSARPSP--YVADVDVYKSHPSHLPErsALQTGDRQWFFFSRTDRKYPNGSRASRTTGDGYWKATGKDR 98 
                         8********************99988555..69*************94357888999********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++  +g++vg kktLv+++grap+ge+tdWvmhey+l
  Seita.2G258300.1.p  99 FICG-GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135
                         ***9.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-527158IPR003441NAC domain
PROSITE profilePS5100551.7359158IPR003441NAC domain
PfamPF023655.3E-2410135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
METPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSARPSPYV ADVDVYKSHP SHLPERSALQ  60
TGDRQWFFFS RTDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA  120
PRGERTDWVM HEYTLLADAL PPAAQGRESY ALYKLFQKSG AGPKNGEQYG APFREEDWLD  180
DDEEGVTADA SANSVPICPA TVEEHAIADR ELPIEDLHEL LSQIGNDQEE FGEAPLDFST  240
PATSHGQGQG WPSGGGDKAE VVDASVSDGA VVVAENTCID LPLGDIEQLL MQISDDQQNA  300
EFFSDFTPSV PQLQLQCDNH QVWLDAHRGQ EVCAADPTAS GGAVVAAECT DTDLEGLLLQ  360
IASDQDMVEP LSDLSPPIPH HNFNQVGIGD FHESHGAPVG NLSCTVQEST FVPQTELRSQ  420
FPQSNLTNVP FSGETNSSEG TSVPHSVSGL ISYNSQDADD EFLEINDFFD LEDVEQSANC  480
TATEHLISAT NGMFDNLEYS DAPTFLPGPF DTAGEVAENQ FFDFGSSGIQ NQGFHYTTQV  540
RTQNQAALNV RSHMKDNHVV LSSHTSGTLN LHAANEPPSR SSTASQSWFN AALSTLLDSV  600
PSSPALAAEI ENTVINRTLQ RISSFRSHQA SGEENTVINR TLQRISSFRS QQAVREEPST  660
RRIQVTRGGR LTFISLLVIL AAVMWTFTAG SALNFCKGLW KSSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-431013516140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G258300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957233.10.0uncharacterized protein LOC101780745 isoform X3
TrEMBLK3ZR580.0K3ZR58_SETIT; Uncharacterized protein
STRINGSi029088m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.19e-72NAC domain containing protein 17