PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G254700.1.p
Common NameSETIT_029222mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 621aa    MW: 65206.4 Da    PI: 10.4389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G254700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-102878446
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                        W t E++ll++av+++G+ +W+++a +++         g+t+ +c++r++ 
  Seita.2G254700.1.p 28 WGTLEELLLACAVTRHGTASWDSVAMEVQtrsplatrPGLTPHSCRLRFRH 78
                        9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-42381IPR009057Homeodomain-like
SMARTSM007173.2E-42482IPR001005SANT/Myb domain
SuperFamilySSF466893.32E-52583IPR009057Homeodomain-like
CDDcd001670.001262864No hitNo description
PfamPF002499.0E-92877IPR001005SANT/Myb domain
PROSITE profilePS500906.2492880IPR017877Myb-like domain
SuperFamilySSF473707.59E-7250357IPR001487Bromodomain
SMARTSM002970.008255361IPR001487Bromodomain
CDDcd043691.38E-6268352No hitNo description
Gene3DG3DSA:1.20.920.101.8E-5279375IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MADGSDGTDV SPESEATAAA AEKGGEIWGT LEELLLACAV TRHGTASWDS VAMEVQTRSP  60
LATRPGLTPH SCRLRFRHLH RRFSTAGSCG EEDEVEEDPD ASAAEGWVDE LRRLRVAELR  120
RDVERCDLSI GTLQSKVKRL REERERSVSG EAKPDEASGN DRLSGEEPGR SCRESNSTDL  180
KPPKHPGHQG GGAKEEEVAK QEASGESAAA SKESSDVRSS ASLCRRRRGT GSGKADEEEE  240
AASAPRAPPA RSPPLAALLE AVAAKLGSVL QRLHEHEGEE AAAYRGTIRR HVDLDTVRRR  300
MATSAGSRAA DDDHYPAHEL YRDLLLLCTN AVVFFRRSTP EHSAAVEARA LVTGHASAAL  360
REPKQERAAV PAPAPAPAGT DIVGSLIEKG KPLIVCRKRS SIAKAAAAAR KEESSTKAEA  420
DAAEEEEESE DEKKAAAAVT ATKDKAWGLR TKKGRGGAVR NPAGLGPRPT KGADGDAATT  480
TTGGAKKADK KGAGGAAAGG PAKKRNAVDF LKRLNQSPSR KRGSPLGNTT RKRSASAAAA  540
AAEQESTTTT RRRGAGRKEG TGRGGSRRGG RGTGTKRGVG RPLKRGPAPA TPPPSKRAKT  600
NTRSEKPSGT GKRGGRRPVG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G254700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354230.10.0uncharacterized protein LOC100277965
TrEMBLK3ZRJ20.0K3ZRJ2_SETIT; Uncharacterized protein
STRINGSi029222m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-14DNA-binding bromodomain-containing protein