PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G254300.1.p
Common NameLOC101766166, SETIT_030195mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 377aa    MW: 39105.4 Da    PI: 8.972
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G254300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.2e-4265140176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC +dls ak yh rhkvC++h+k+p v+v+g+eqrfCqqCsrfhel efD++krsCrrrL +hnerrrk+
  Seita.2G254300.1.p  65 RCQVEGCGVDLSGAKPYHCRHKVCSMHTKTPRVVVAGIEQRFCQQCSRFHELPEFDQGKRSCRRRLIGHNERRRKP 140
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-3560127IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.41963140IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-4064144IPR004333Transcription factor, SBP-box
PfamPF031101.6E-3266139IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
METGGSGSGN GGGSDDVHGL KFGKKIYFEQ DAAAGGSGTA AAAAAGGRKG KGVASGGPPP  60
AAPPRCQVEG CGVDLSGAKP YHCRHKVCSM HTKTPRVVVA GIEQRFCQQC SRFHELPEFD  120
QGKRSCRRRL IGHNERRRKP PPGPLTSRYG RLAASFQEPG RFRSFLLDFS YPRVPSSVRD  180
AWPAIQPGGD RMPGTIQWQG NQGIHPHRST VAGYGNHAYI GHGGSVAGPS SVLPAAFELP  240
PGGCVAGVAT DSSCALSLLS TTQPWDATTE SASHNRSPTM SAASAFEGTP VAPSVMASSY  300
ATAASSWATG PRGHVEGSSR NVQHHEDALH LVGHGHFSGE LELALQGSGP SNPPHVHHGS  360
SSGTFGHSSN AMNWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30661391184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G254300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957197.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0571e-154SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLK3ZUB40.0K3ZUB4_SETIT; Uncharacterized protein
STRINGSi030195m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-45squamosa promoter binding protein-like 9