PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G241500.1.p | ||||||||
Common Name | SETIT_029882mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 437aa MW: 45572.8 Da PI: 6.356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 263 | 311 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Seita.2G241500.1.p 263 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 311 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.05E-11 | 258 | 315 | No hit | No description |
SuperFamily | SSF47459 | 6.41E-17 | 258 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.65 | 260 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 261 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-7 | 263 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-11 | 266 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MDMNESGEKG MEGNASSAGA GIPVEWQTQF SAAAFACPQA QQHQGPMMDS AFATAGMWAS 60 TSQAMVLSDV GGAMSATRGG GGFLAPVPGF LPQGLGHFPV DSGFIERAAR ASCFGGGGGG 120 GVMGGAGFGA ADQHMNGAFS GSSEALLDHQ RKDGNEKGEP ELGRNGHDGV PSSEAAGGDC 180 SSKGTSDSKK RRRPNEVMGG DQVQSSNLPA DSANESVHSK DKGEESSPAT TTGKSKGKGA 240 KETSESQKED YIHVRARRGQ ATNSHSLAER LRREKISERM KLLQDLVPGC SKVTGKAVML 300 DEIINYVQSL QRQVEFLSMK LATVNPRLDL NIEGLLSKDL LRFPGVSSSS LGFSPEMIHP 360 QLQLSQPGLI QGGAAGMANP DVFRRIIQAQ LSAKDGSQMP HALNGPFSDV AQMGYPSLGS 420 SAQDLSIRPS QDGFQM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G241500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726790 | 0.0 | KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698809.1 | 0.0 | transcription factor bHLH49 isoform X2 | ||||
Swissprot | Q9CAA9 | 1e-67 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | K3ZTF2 | 0.0 | K3ZTF2_SETIT; Uncharacterized protein | ||||
STRING | Si029882m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2909 | 37 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 3e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G241500.1.p |
Publications ? help Back to Top | |||
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