PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G229700.1.p
Common NameLOC101759803, SETIT_030611mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 310aa    MW: 33097.2 Da    PI: 8.7681
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G229700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.93.3e-33341262103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++e+++++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ 
  Seita.2G229700.1.p  34 FLTKTHQMVEEPSTDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQG 115
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll+ i+r+ks+
  Seita.2G229700.1.p 116 LLSGIRRRKST 126
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3230123IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-3630123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5430123IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-2934123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-183457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-188597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEAEAVAVAV AAAGQPATSK SGGGARAGGG PAPFLTKTHQ MVEEPSTDEV ISWAEQGRSF  60
VVWKPVELAR DLLPLHFKHC NFSSFVRQLN TYGFRKVVPD RWEFANENFR RGEQGLLSGI  120
RRRKSTTPQS SKSGGSGAVN VAFPPPLPPA PPASATTSGG GNERSSSSAS SPPRADLTSE  180
NEQLKKDNRT LATELAQARR QCEELLGFLS RFLDVRQLDL GMLMQEDVVR AAAGDAHQQC  240
RSAVADQLEC GGEEGKSVKL FGVLLKDAAR KRGRCEEAAA SERPIKMIRI GEPWVGVPSS  300
GPGRFGGEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-203412329129Heat shock factor protein 1
5d5v_B1e-203412329129Heat shock factor protein 1
5d5v_D1e-203412329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G229700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277540.0KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957012.10.0heat stress transcription factor B-1
SwissprotQ67TP91e-132HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLK3ZVI00.0K3ZVI0_SETIT; Uncharacterized protein
STRINGSi030611m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-56heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]